BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg895208 Length=1599 Score E Sequences producing significant alignments: (Bits) Value AT4G10710.1 | Symbols: SPT16 | global transcription factor C | ... 2036 0.0 AT4G10670.1 | Symbols: GTC2 | GTC2 | chr4:6584727-6586262 FORWA... 1908 0.0 > AT4G10710.1 | Symbols: SPT16 | global transcription factor C | chr4:6601989-6606354 REVERSE LENGTH=3639 Length=3639 Score = 2036 bits (1102), Expect = 0.0 Identities = 1452/1617 (90%), Gaps = 40/1617 (2%) Strand=Plus/Plus Query 9 CTACAAGAATATTAACGACATTCCCCAACCTCGGGATTTGATGAT-CATGGTTGATCATA 67 |||||||||| |||||||||| |||| | | ||| |||||||| || ||||||| | Sbjct 1800 CTACAAGAATGTTAACGACATGCCCC-A--TAAGGAATTGATGATCCA-GGTTGAT-ACG 1854 Query 68 AG-AGCAACGCTGTATTATTACCAATATACGGCATCATGGTTCCATTCAACGTGACTACA 126 || | | | |||||||| ||||| || || || | | ||||||||||| | ||| ||||| Sbjct 1855 AGAAACGAGGCTGTATTGTTACCCATCTATGGGAGCTTGGTTCCATTCCATGTGGCTACA 1914 Query 127 ATAAGAACAGTCTTAGG----C-A-AT--C-A---AAA-TAC--CATCCGTATCATTTTC 171 ||||||||||| | ||| | | || | | ||| | | |||||||||||||||| Sbjct 1915 ATAAGAACAGTGTCAGGCAATCAAGATACCAACCGAAACTGCTACATCCGTATCATTTTC 1974 Query 172 AATGTCCCGGGTACACCCTTCAACCCTCATGACTCCAACTCCTTGAAAAATCAGGACGCT 231 ||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| ||| Sbjct 1975 AATGTCCCGGGTACACCCTTCAACCCTCATGACTCAAACTCTTTGAAAAACCAGGGTGCT 2034 Query 232 ATTTACATCAAGGAGGTTTCCTTCCGGACCAAGGATTCAAAGCATAGCAGCCAAGTAGTT 291 || ||| ||||||||||||| ||||||||||||||||||| |||||||||| ||||| | Sbjct 2035 ATCTACCTCAAGGAGGTTTCATTCCGGACCAAGGATTCAAGGCATAGCAGCGAAGTAACT 2094 Query 292 CAGTC-GTTTAAGACCCTCAAACGGAAAGTCATGTCCCTGGAGTCAGAGAGAGCGGAAAG 350 || | | |||||||||| | |||| |||||||| || ||||||||||||||| ||||| Sbjct 2095 CA-ACAGATTAAGACCCTTAGACGGCAAGTCATGGCCAGGGAGTCAGAGAGAGCTGAAAG 2153 Query 351 AACGTCATTGGTGACTCAAGAGAAACTTAAGATTGCAAGTAACAAGTCCAAACCCTTAAG 410 || |||||||||| |||||||||||| || ||||| | ||||||| ||||||| | || Sbjct 2154 GGCGACATTGGTGACCCAAGAGAAACTTCAGCTTGCAGGGAACAAGTTCAAACCCCTCAG 2213 Query 411 GTTGT-TGAACCTGTGGATCCGTCCGCCTTTTAGTGGGCGCAAGAAGATTCGTGGGACAC 469 ||||| | | |||||||||||||||||||||||||||||||||||||||| |||||||| Sbjct 2214 GTTGTCCG-AGCTGTGGATCCGTCCGCCTTTTAGTGGGCGCAAGAAGATTCCTGGGACAC 2272 Query 470 TGGAAGCTCATGCCAATGGTTTCAGGTATTC-A--A-C-GGCC-AACGACCGCGTGGATG 523 | ||||||||||| ||||||||||||||||| | | | |||| |||| |||||||||| Sbjct 2273 TCGAAGCTCATGCAAATGGTTTCAGGTATTCAACTACCAGGCCTGACGAGCGCGTGGATG 2332 Query 524 TCTTGTTTGCAAACATAAAGCATGCGTTTGTCCAACCGGCTGAGAAAGAGATGACCACCC 583 || |||||||||||||||||||||||||| |||| || |||||||| ||||||| ||||| Sbjct 2333 TCCTGTTTGCAAACATAAAGCATGCGTTTTTCCAGCCTGCTGAGAAGGAGATGATCACCC 2392 Query 584 TTCTTCATTTTCATTTGCACAACCACATCATGGTAGGAACCAAGAAGACAAAGGACGTCC 643 | |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | Sbjct 2393 TCCTTCATTTTCATTTGCACAACCACATCATGGTAGGAACTAAGAAGACAAAGGACGTTC 2452 Query 644 AATTCTATGTGGAGGTAAGGGATGTTGTGCAGTCTTTAGGTAGTGGGAGGAGATCATCAG 703 |||||||||||||||||| |||||||||||||||||||||| |||||||||| ||||| Sbjct 2453 AATTCTATGTGGAGGTAATGGATGTTGTGCAGTCTTTAGGTGGTGGGAGGAG---ATCAG 2509 Query 704 CCTATGATCTAGATGAGATAGATGAAGAACAGCGAGAGCGAGATAGGAAGAACAAGATCA 763 ||||||||| ||||||||| || ||||||||| | ||||| ||||||||||||||||||| Sbjct 2510 CCTATGATCCAGATGAGATTGACGAAGAACAGAGGGAGCGCGATAGGAAGAACAAGATCA 2569 Query 764 ACATGGAGTTCAATCATTTTGCAAACCGGGTCAACGATATATGGAAACTACCCCAGTTTG 823 ||||||| ||||||||||||||||||||||| || ||||| ||| ||||||| ||||||| Sbjct 2570 ACATGGATTTCAATCATTTTGCAAACCGGGTGAATGATATGTGGCAACTACCACAGTTTG 2629 Query 824 CAAGTCTGGACCTAGAGTTTGATCAACCTCTGAGAGAGCTTGGTTTCCATGGTGTTCCGC 883 ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 2630 CAAGTCTGGACCTTGAGTTTGATCAACCTCTGAGAGAGCTTGGTTTCCATGGTGTTCCGC 2689 Query 884 ATAAGACATCTGCATTCATTATACCGACCTCTAGCTGCTTAGTTGAGCTGATAGAACACC 943 | ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| ||| Sbjct 2690 ACAAGACATCTGCATTCATAATACCGACCTCCAGCTGCTTAGTTGAGCTGATAGAATACC 2749 Query 944 CGTTCCTCGTGGTAAGTCTGAGTGAGATTGAGATAGTGAATCTTGAAAGAGTTGGGTTTG 1003 ||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| Sbjct 2750 CGTTCCTCGTGGTGAGTCTGAGTGAGATTGAGATTGTGAATCTTGAGAGAGTTGGGTTTG 2809 Query 1004 GGCAGAGGAGCTTTGACATGGTTATCATATTCAAGGACTTCAAAAAAGATGTTTAT-AGG 1062 |||||| || ||||||||||| ||||| |||||||||||||||||||||| || | ||| Sbjct 2810 GGCAGAAGAACTTTGACATGGCCATCATCTTCAAGGACTTCAAAAAAGATG-TTCTCAGG 2868 Query 1063 ATTGACTCAGTTCCCACAAGTTCACTAGAGGGGATAAAGGAGTGGCTTGACACTATAGAT 1122 ||||||||||||||||||| || ||||||||||||||||||||||| ||||| | |||| Sbjct 2869 GTTGACTCAGTTCCCACAAGCTCCCTAGAGGGGATAAAGGAGTGGCTAGACACCACAGAT 2928 Query 1123 ATAAAGTACTACGAGAGCAAACTGAATCTGAACTGGAGACAGATCCTGAAGACAATCACT 1182 ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| Sbjct 2929 ATAAAGTACTACGAGAGCAAACTGAATCTGAACTGGAGACAGATCCTAAAGACGATCACA 2988 Query 1183 GATGATCCACAGAGCTTTATAGATGATGGAGGGTGGGAGTTTTTGAACCTGAACGGAAGC 1242 |||||||| ||||||||||||||||||||||| ||||||||| |||||||| |||||||| Sbjct 2989 GATGATCCGCAGAGCTTTATAGATGATGGAGGATGGGAGTTTCTGAACCTGGACGGAAGC 3048 Query 1243 GATTCAGAATCTGGCGGCTCTGAGGAGTCAGACAAAGGATATGAACCATCAGATGTAGAG 1302 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 3049 GATTCAGAATCTGGCGGGTCTGAGGAGTCAGACAAAGGATATGAACCATCAGATGTAGAG 3108 Query 1303 GCTGAGTCTGAGTCAGAGGATGAGGATTCAGAGAGTGAGTCAATGATGGAGTCAGAGGAT 1362 | |||||||||||||||||| |||| |||||||||||||||| || |||||||||| ||| Sbjct 3109 GTTGAGTCTGAGTCAGAGGACGAGGCTTCAGAGAGTGAGTCACTGGTGGAGTCAGACGAT 3168 Query 1363 GAAGAAGAAGAGGACTCAGAGCAAGAGTCAGAGGAAGAGAAAGGTAAGACTTGGGATGAA 1422 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3169 GATGAAGAAGAGGACTCAGAGCAAGAGTCAGAGGAAGAGAAAGGTAAGACTTGGGATGAA 3228 Query 1423 CTTGAGAGAGAAGCTACTAATGCAGACAGAGAGCATGGAGTTGAGTCTGATAGCGAGGAA 1482 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 3229 CTGGAGAGAGAAGCTACTAATGCAGACAGAGAGCATGGAGTTGAGTCTGATAGCGAGGAA 3288 Query 1483 GAGAGGAAGAGAAGGAAGATGAAAGCGTTTGGGAAATCGCGACCTGGAAGTAGTGGTGGA 1542 |||||||||||||| |||||||||||||||||||||||||||||||||| ||| |||||| Sbjct 3289 GAGAGGAAGAGAAGAAAGATGAAAGCGTTTGGGAAATCGCGACCTGGAACTAGCGGTGGA 3348 Query 1543 GGCGGTAGTAGCAGCATGAAGAACATGCCACCATCTAAACGCAGCAAGCACAGGTGA 1599 || |||||||||||||||||||||||||||||||||||||||| | |||||||||| Sbjct 3349 GGTGGTAGTAGCAGCATGAAGAACATGCCACCATCTAAACGCA--A-GCACAGGTGA 3402 > AT4G10670.1 | Symbols: GTC2 | GTC2 | chr4:6584727-6586262 FORWARD LENGTH=1536 Length=1536 Score = 1908 bits (1033), Expect = 0.0 Identities = 1392/1562 (89%), Gaps = 37/1562 (2%) Strand=Plus/Plus Query 49 ATGATCATGGTTGATCATAAGAGCAACGCTGTATTATTACCAATATACGGCATCATGGTT 108 ||||||| ||||||||| |||||| || ||||||| |||||||||||||||| |||||| Sbjct 1 ATGATCACGGTTGATCACAAGAGCGACACTGTATTGTTACCAATATACGGCAGGATGGTT 60 Query 109 CCATTCAACGTGACTACAATAAGAACAGTCTTAGGCAATCAAAATACCATCCGTATCATT 168 |||||||||||||||||||||||||||||||||||||||||||| ||||||||| | || Sbjct 61 CCATTCAACGTGACTACAATAAGAACAGTCTTAGGCAATCAAAACACCATCCGTGTAATA 120 Query 169 TTCAATGTCCCGGGTACACCCTTCAACCCTCATGACTCCAACTCCTTGAAAAATC-AGGA 227 ||||||||||||||||||||||| |||||| |||||| || |||||||| | |||| Sbjct 121 TTCAATGTCCCGGGTACACCCTTAAACCCTAATGACT----CT--TTGAAAAA-CAAGGA 173 Query 228 CGCTATTTACATCAAGGAGGTTTCCTTCCGGACCAAGGATTCAAAGCATAGCAGCCAAGT 287 |||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||| | || Sbjct 174 CGCTATCTACCTCAAGGAGGTTTCATTCCGGACCAAGGATTCAAGGCATAGCAGCGATGT 233 Query 288 AGTTCAGTC-GTTTAAGACCCTCAAACGGAAAGTCATGTCCCTGGAGTCAGAGAGAGCGG 346 |||||| | | |||||| ||||| ||||||||||||| | | ||||||||||||||| | Sbjct 234 AGTTCA-ACAGGTTAAGAGCCTCAGACGGAAAGTCATGGCACGGGAGTCAGAGAGAGCTG 292 Query 347 AAAGAACGTCATTGGTG-ACTCAAGAGAAACTTAAGATTGCAAGTAACAAGTCCAAACCC 405 | ||||| ||| ||||| || ||||| |||||| |||||| ||| ||||| || |||||| Sbjct 293 AGAGAACTTCACTGGTGAAC-CAAGAAAAACTTCAGATTGTAAGGAACAACTCAAAACCC 351 Query 406 TTAAGGTTGTTGAACCTGTGGATCCGTCCGCCTTTTAGTGGGCGCAAGAAGATTCGTGGG 465 ||||| |||| || |||||||||||||||||||||||||| |||||||||| ||||||| Sbjct 352 TTAAGTTTGTCCAATCTGTGGATCCGTCCGCCTTTTAGTGGACGCAAGAAGAATCGTGGG 411 Query 466 ACACTGGAAGCTCATGCCAATGGTTTCAGGTATTCAACGGCCAACGACCGCGTGGATGTC 525 ||||| |||||||||| ||||||||| |||||||||||| ||||||| ||||| |||||| Sbjct 412 ACACTTGAAGCTCATGTCAATGGTTTTAGGTATTCAACGACCAACGAGCGCGTTGATGTC 471 Query 526 TTGTTTGCAAACATAAAGCATGCGTTTGTCCAACCGGCTGAGAAAGAGATGACCACCCTT 585 |||||||||||||||||||||||||| | || ||||| ||||| ||||||||||||| | Sbjct 472 CTGTTTGCAAACATAAAGCATGCGTTTTTTCAGCCGGCGGAGAAGGAGATGACCACCC-T 530 Query 586 CTT-CATTTTCATTTGCACAACCACATCATGGTAGGAACCAAGAAGACAAAGGACGTCCA 644 ||| ||||||||| | ||||||||||||||||||||||||||||| ||||| ||||| || Sbjct 531 CTTACATTTTCATCTCCACAACCACATCATGGTAGGAACCAAGAAAACAAAAGACGTACA 590 Query 645 ATTCTATGTGGAGGTAAGGGATGTTGTGCAGTCTTTAGGTA-GTGGGAGGAGATCATCAG 703 || ||||||||||||| ||||||||||||||||||||| | || ||||||||||||||| Sbjct 591 GTTTTATGTGGAGGTAATGGATGTTGTGCAGTCTTTAGG-AGGTAGGAGGAGATCATCAG 649 Query 704 CCTATGAT-CTAGATGAGATAGATGAAGAACAGCGAGAGCGAGATAGGAAGAACAAGATC 762 | |||||| | ||||||||| | |||||||||| ||||||| |||||||| || |||||| Sbjct 650 CTTATGATGC-AGATGAGATTGTTGAAGAACAGAGAGAGCGCGATAGGAAAAATAAGATC 708 Query 763 AACATGGAGTTCAATCATTTTGCAAACCGGGTCAACGATATATGGAAACTACCCCAGTTT 822 |||||||| |||||||| |||||||| | |||||||||||| ||| |||||||||||||| Sbjct 709 AACATGGATTTCAATCACTTTGCAAATCAGGTCAACGATATGTGGCAACTACCCCAGTTT 768 Query 823 GCAAGTCTGGA-CCTAGAGTTTGATCAACCTCTGAGAGAGCTTGGTTTCCATGGTGTTCC 881 |||||| | || | |||||||||||||||||||||||||| |||||||| ||||||| || Sbjct 769 GCAAGT-TTGAGCTTAGAGTTTGATCAACCTCTGAGAGAGTTTGGTTTCAATGGTGTCCC 827 Query 882 GCATAAGACATCTGCATTCATTATACCGACCTCTAGCTGCTTAGTTGAGCTGATAGAA-C 940 || ||||||||| | ||||| ||||||||||| ||||||||||||||||||| |||| | Sbjct 828 CCACAAGACATCTACCTTCATAATACCGACCTCAAGCTGCTTAGTTGAGCTGACAGAATC 887 Query 941 ACCCGTTCCTCGTGGTAAGTCTGAGTGAGATTGAGATAGTGAATCTTGAAAGAGTTGGGT 1000 ||||||| | ||||| |||| |||||||||||||| ||||||||||| |||||||||| Sbjct 888 -CCCGTTCTTGGTGGTCTGTCTAAGTGAGATTGAGATTGTGAATCTTGAGAGAGTTGGGT 946 Query 1001 TTGGGCAGAGGAGCTTTGACATGGTTATCATATTCAAGGACTTCAAAAAAGATGTT-TAT 1059 |||| || | |||||||||||||| |||||| ||||||||||| || ||||||||| | | Sbjct 947 TTGGTCAAAAGAGCTTTGACATGGCTATCATCTTCAAGGACTTGAAGAAAGATGTTCT-T 1005 Query 1060 AGGATTGACTCAGTTCCCACAAGTTCA-CTAGAGGGGATAAAGGAGTGGCTTGACACTAT 1118 ||| ||||||||||||| ||||||| | |||||||||||||||| ||||||||||||| Sbjct 1006 AGGGTTGACTCAGTTCCAACAAGTT-AGTTAGAGGGGATAAAGGAATGGCTTGACACTAC 1064 Query 1119 AGATATAAAGTACTACGAGAGCAAACTGAATCTGAACTGGAGACAGATCCTGAAGACAAT 1178 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 1065 AGATATAAAGTACTACGAGAGCAAACTGAATCTGAACTGGAGACAGATCCTGAAGACGAT 1124 Query 1179 CACTGATGATCCACAGAGCTTTATAGATGATGGAGGGTGGGAGTTTTTGAACCTGAACGG 1238 ||| |||||||| |||||||||| ||||| |||||| |||||||||||||| | | |||| Sbjct 1125 CACGGATGATCCGCAGAGCTTTACAGATGCTGGAGGATGGGAGTTTTTGAATCAGGACGG 1184 Query 1239 AAGCGATTCAGAATCTGGCGGCTCTGAGGAGTCAGACAAAGGATATGAACCATCAGATGT 1298 |||||||||||| ||||||||||||||||| ||||||||||| ||||||||||||||||| Sbjct 1185 AAGCGATTCAGAGTCTGGCGGCTCTGAGGACTCAGACAAAGGGTATGAACCATCAGATGT 1244 Query 1299 AGAGGCTGAGTCTGAGTCAGAGGATGAGG-ATTCAGAGAGTGAGTCAATGATGGAGTCAG 1357 |||| |||||||||||||||||| ||| || |||||||||||||| || | | | | Sbjct 1245 GGAGGTTGAGTCTGAGTCAGAGGACGAGACAT-CAGAGAGTGAGTCA--GACG-A-T--G 1297 Query 1358 AGGATGAAGAAGAAGAGGACTCAGAGCAAGAGTCAGAGGAAGAGAAAGGTAAGACTTGGG 1417 | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1298 A--A-GAAGAAGAAGAGGACTCAGAGCAAGAGTCAGAGGAAGAGAAAGGTAAGACTTGGG 1354 Query 1418 ATGAACTTGAGAGAGAAGCTACTAATGCAGACAGAGAGCATGGAGTTGAGTCTGATAGCG 1477 ||| || |||||||||||||||||||||||||||||||||||||||||||||||||| | Sbjct 1355 CTGAGCTGGAGAGAGAAGCTACTAATGCAGACAGAGAGCATGGAGTTGAGTCTGATAGTG 1414 Query 1478 AGGAAGAGAGGAAGAGAAGGAAGATGAAAGCGTTTGGGAAATCGCGACCTGGAAGTAGTG 1537 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 1415 AGGAAGAGAGGAAGAGAAGGAAGATGAAAGCGTTTGGGAAATCGCGTCCTGGAAGTAGCG 1474 Query 1538 GTGGAGGCGGTAGTAGCAGCATGAAGAACATGCCACCATCTAAACGCAGCAAGCACAGGT 1597 ||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| ||| Sbjct 1475 GTGCAGGCGGTAGTAGCAGCATGAAGAACATGCCACCATCTAAACGCAGCAGGCACCGGT 1534 Query 1598 GA 1599 || Sbjct 1535 GA 1536 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 78965457285 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5