BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895208
Length=1599
Score E
Sequences producing significant alignments: (Bits) Value
AT4G10710.1 | Symbols: SPT16 | global transcription factor C | ... 2036 0.0
AT4G10670.1 | Symbols: GTC2 | GTC2 | chr4:6584727-6586262 FORWA... 1908 0.0
> AT4G10710.1 | Symbols: SPT16 | global transcription factor C
| chr4:6601989-6606354 REVERSE LENGTH=3639
Length=3639
Score = 2036 bits (1102), Expect = 0.0
Identities = 1452/1617 (90%), Gaps = 40/1617 (2%)
Strand=Plus/Plus
Query 9 CTACAAGAATATTAACGACATTCCCCAACCTCGGGATTTGATGAT-CATGGTTGATCATA 67
|||||||||| |||||||||| |||| | | ||| |||||||| || ||||||| |
Sbjct 1800 CTACAAGAATGTTAACGACATGCCCC-A--TAAGGAATTGATGATCCA-GGTTGAT-ACG 1854
Query 68 AG-AGCAACGCTGTATTATTACCAATATACGGCATCATGGTTCCATTCAACGTGACTACA 126
|| | | | |||||||| ||||| || || || | | ||||||||||| | ||| |||||
Sbjct 1855 AGAAACGAGGCTGTATTGTTACCCATCTATGGGAGCTTGGTTCCATTCCATGTGGCTACA 1914
Query 127 ATAAGAACAGTCTTAGG----C-A-AT--C-A---AAA-TAC--CATCCGTATCATTTTC 171
||||||||||| | ||| | | || | | ||| | | ||||||||||||||||
Sbjct 1915 ATAAGAACAGTGTCAGGCAATCAAGATACCAACCGAAACTGCTACATCCGTATCATTTTC 1974
Query 172 AATGTCCCGGGTACACCCTTCAACCCTCATGACTCCAACTCCTTGAAAAATCAGGACGCT 231
||||||||||||||||||||||||||||||||||| ||||| |||||||| |||| |||
Sbjct 1975 AATGTCCCGGGTACACCCTTCAACCCTCATGACTCAAACTCTTTGAAAAACCAGGGTGCT 2034
Query 232 ATTTACATCAAGGAGGTTTCCTTCCGGACCAAGGATTCAAAGCATAGCAGCCAAGTAGTT 291
|| ||| ||||||||||||| ||||||||||||||||||| |||||||||| ||||| |
Sbjct 2035 ATCTACCTCAAGGAGGTTTCATTCCGGACCAAGGATTCAAGGCATAGCAGCGAAGTAACT 2094
Query 292 CAGTC-GTTTAAGACCCTCAAACGGAAAGTCATGTCCCTGGAGTCAGAGAGAGCGGAAAG 350
|| | | |||||||||| | |||| |||||||| || ||||||||||||||| |||||
Sbjct 2095 CA-ACAGATTAAGACCCTTAGACGGCAAGTCATGGCCAGGGAGTCAGAGAGAGCTGAAAG 2153
Query 351 AACGTCATTGGTGACTCAAGAGAAACTTAAGATTGCAAGTAACAAGTCCAAACCCTTAAG 410
|| |||||||||| |||||||||||| || ||||| | ||||||| ||||||| | ||
Sbjct 2154 GGCGACATTGGTGACCCAAGAGAAACTTCAGCTTGCAGGGAACAAGTTCAAACCCCTCAG 2213
Query 411 GTTGT-TGAACCTGTGGATCCGTCCGCCTTTTAGTGGGCGCAAGAAGATTCGTGGGACAC 469
||||| | | |||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 2214 GTTGTCCG-AGCTGTGGATCCGTCCGCCTTTTAGTGGGCGCAAGAAGATTCCTGGGACAC 2272
Query 470 TGGAAGCTCATGCCAATGGTTTCAGGTATTC-A--A-C-GGCC-AACGACCGCGTGGATG 523
| ||||||||||| ||||||||||||||||| | | | |||| |||| ||||||||||
Sbjct 2273 TCGAAGCTCATGCAAATGGTTTCAGGTATTCAACTACCAGGCCTGACGAGCGCGTGGATG 2332
Query 524 TCTTGTTTGCAAACATAAAGCATGCGTTTGTCCAACCGGCTGAGAAAGAGATGACCACCC 583
|| |||||||||||||||||||||||||| |||| || |||||||| ||||||| |||||
Sbjct 2333 TCCTGTTTGCAAACATAAAGCATGCGTTTTTCCAGCCTGCTGAGAAGGAGATGATCACCC 2392
Query 584 TTCTTCATTTTCATTTGCACAACCACATCATGGTAGGAACCAAGAAGACAAAGGACGTCC 643
| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
Sbjct 2393 TCCTTCATTTTCATTTGCACAACCACATCATGGTAGGAACTAAGAAGACAAAGGACGTTC 2452
Query 644 AATTCTATGTGGAGGTAAGGGATGTTGTGCAGTCTTTAGGTAGTGGGAGGAGATCATCAG 703
|||||||||||||||||| |||||||||||||||||||||| |||||||||| |||||
Sbjct 2453 AATTCTATGTGGAGGTAATGGATGTTGTGCAGTCTTTAGGTGGTGGGAGGAG---ATCAG 2509
Query 704 CCTATGATCTAGATGAGATAGATGAAGAACAGCGAGAGCGAGATAGGAAGAACAAGATCA 763
||||||||| ||||||||| || ||||||||| | ||||| |||||||||||||||||||
Sbjct 2510 CCTATGATCCAGATGAGATTGACGAAGAACAGAGGGAGCGCGATAGGAAGAACAAGATCA 2569
Query 764 ACATGGAGTTCAATCATTTTGCAAACCGGGTCAACGATATATGGAAACTACCCCAGTTTG 823
||||||| ||||||||||||||||||||||| || ||||| ||| ||||||| |||||||
Sbjct 2570 ACATGGATTTCAATCATTTTGCAAACCGGGTGAATGATATGTGGCAACTACCACAGTTTG 2629
Query 824 CAAGTCTGGACCTAGAGTTTGATCAACCTCTGAGAGAGCTTGGTTTCCATGGTGTTCCGC 883
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2630 CAAGTCTGGACCTTGAGTTTGATCAACCTCTGAGAGAGCTTGGTTTCCATGGTGTTCCGC 2689
Query 884 ATAAGACATCTGCATTCATTATACCGACCTCTAGCTGCTTAGTTGAGCTGATAGAACACC 943
| ||||||||||||||||| ||||||||||| |||||||||||||||||||||||| |||
Sbjct 2690 ACAAGACATCTGCATTCATAATACCGACCTCCAGCTGCTTAGTTGAGCTGATAGAATACC 2749
Query 944 CGTTCCTCGTGGTAAGTCTGAGTGAGATTGAGATAGTGAATCTTGAAAGAGTTGGGTTTG 1003
||||||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 2750 CGTTCCTCGTGGTGAGTCTGAGTGAGATTGAGATTGTGAATCTTGAGAGAGTTGGGTTTG 2809
Query 1004 GGCAGAGGAGCTTTGACATGGTTATCATATTCAAGGACTTCAAAAAAGATGTTTAT-AGG 1062
|||||| || ||||||||||| ||||| |||||||||||||||||||||| || | |||
Sbjct 2810 GGCAGAAGAACTTTGACATGGCCATCATCTTCAAGGACTTCAAAAAAGATG-TTCTCAGG 2868
Query 1063 ATTGACTCAGTTCCCACAAGTTCACTAGAGGGGATAAAGGAGTGGCTTGACACTATAGAT 1122
||||||||||||||||||| || ||||||||||||||||||||||| ||||| | ||||
Sbjct 2869 GTTGACTCAGTTCCCACAAGCTCCCTAGAGGGGATAAAGGAGTGGCTAGACACCACAGAT 2928
Query 1123 ATAAAGTACTACGAGAGCAAACTGAATCTGAACTGGAGACAGATCCTGAAGACAATCACT 1182
||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||
Sbjct 2929 ATAAAGTACTACGAGAGCAAACTGAATCTGAACTGGAGACAGATCCTAAAGACGATCACA 2988
Query 1183 GATGATCCACAGAGCTTTATAGATGATGGAGGGTGGGAGTTTTTGAACCTGAACGGAAGC 1242
|||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||||||||
Sbjct 2989 GATGATCCGCAGAGCTTTATAGATGATGGAGGATGGGAGTTTCTGAACCTGGACGGAAGC 3048
Query 1243 GATTCAGAATCTGGCGGCTCTGAGGAGTCAGACAAAGGATATGAACCATCAGATGTAGAG 1302
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3049 GATTCAGAATCTGGCGGGTCTGAGGAGTCAGACAAAGGATATGAACCATCAGATGTAGAG 3108
Query 1303 GCTGAGTCTGAGTCAGAGGATGAGGATTCAGAGAGTGAGTCAATGATGGAGTCAGAGGAT 1362
| |||||||||||||||||| |||| |||||||||||||||| || |||||||||| |||
Sbjct 3109 GTTGAGTCTGAGTCAGAGGACGAGGCTTCAGAGAGTGAGTCACTGGTGGAGTCAGACGAT 3168
Query 1363 GAAGAAGAAGAGGACTCAGAGCAAGAGTCAGAGGAAGAGAAAGGTAAGACTTGGGATGAA 1422
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3169 GATGAAGAAGAGGACTCAGAGCAAGAGTCAGAGGAAGAGAAAGGTAAGACTTGGGATGAA 3228
Query 1423 CTTGAGAGAGAAGCTACTAATGCAGACAGAGAGCATGGAGTTGAGTCTGATAGCGAGGAA 1482
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3229 CTGGAGAGAGAAGCTACTAATGCAGACAGAGAGCATGGAGTTGAGTCTGATAGCGAGGAA 3288
Query 1483 GAGAGGAAGAGAAGGAAGATGAAAGCGTTTGGGAAATCGCGACCTGGAAGTAGTGGTGGA 1542
|||||||||||||| |||||||||||||||||||||||||||||||||| ||| ||||||
Sbjct 3289 GAGAGGAAGAGAAGAAAGATGAAAGCGTTTGGGAAATCGCGACCTGGAACTAGCGGTGGA 3348
Query 1543 GGCGGTAGTAGCAGCATGAAGAACATGCCACCATCTAAACGCAGCAAGCACAGGTGA 1599
|| |||||||||||||||||||||||||||||||||||||||| | ||||||||||
Sbjct 3349 GGTGGTAGTAGCAGCATGAAGAACATGCCACCATCTAAACGCA--A-GCACAGGTGA 3402
> AT4G10670.1 | Symbols: GTC2 | GTC2 | chr4:6584727-6586262 FORWARD
LENGTH=1536
Length=1536
Score = 1908 bits (1033), Expect = 0.0
Identities = 1392/1562 (89%), Gaps = 37/1562 (2%)
Strand=Plus/Plus
Query 49 ATGATCATGGTTGATCATAAGAGCAACGCTGTATTATTACCAATATACGGCATCATGGTT 108
||||||| ||||||||| |||||| || ||||||| |||||||||||||||| ||||||
Sbjct 1 ATGATCACGGTTGATCACAAGAGCGACACTGTATTGTTACCAATATACGGCAGGATGGTT 60
Query 109 CCATTCAACGTGACTACAATAAGAACAGTCTTAGGCAATCAAAATACCATCCGTATCATT 168
|||||||||||||||||||||||||||||||||||||||||||| ||||||||| | ||
Sbjct 61 CCATTCAACGTGACTACAATAAGAACAGTCTTAGGCAATCAAAACACCATCCGTGTAATA 120
Query 169 TTCAATGTCCCGGGTACACCCTTCAACCCTCATGACTCCAACTCCTTGAAAAATC-AGGA 227
||||||||||||||||||||||| |||||| |||||| || |||||||| | ||||
Sbjct 121 TTCAATGTCCCGGGTACACCCTTAAACCCTAATGACT----CT--TTGAAAAA-CAAGGA 173
Query 228 CGCTATTTACATCAAGGAGGTTTCCTTCCGGACCAAGGATTCAAAGCATAGCAGCCAAGT 287
|||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||| | ||
Sbjct 174 CGCTATCTACCTCAAGGAGGTTTCATTCCGGACCAAGGATTCAAGGCATAGCAGCGATGT 233
Query 288 AGTTCAGTC-GTTTAAGACCCTCAAACGGAAAGTCATGTCCCTGGAGTCAGAGAGAGCGG 346
|||||| | | |||||| ||||| ||||||||||||| | | ||||||||||||||| |
Sbjct 234 AGTTCA-ACAGGTTAAGAGCCTCAGACGGAAAGTCATGGCACGGGAGTCAGAGAGAGCTG 292
Query 347 AAAGAACGTCATTGGTG-ACTCAAGAGAAACTTAAGATTGCAAGTAACAAGTCCAAACCC 405
| ||||| ||| ||||| || ||||| |||||| |||||| ||| ||||| || ||||||
Sbjct 293 AGAGAACTTCACTGGTGAAC-CAAGAAAAACTTCAGATTGTAAGGAACAACTCAAAACCC 351
Query 406 TTAAGGTTGTTGAACCTGTGGATCCGTCCGCCTTTTAGTGGGCGCAAGAAGATTCGTGGG 465
||||| |||| || |||||||||||||||||||||||||| |||||||||| |||||||
Sbjct 352 TTAAGTTTGTCCAATCTGTGGATCCGTCCGCCTTTTAGTGGACGCAAGAAGAATCGTGGG 411
Query 466 ACACTGGAAGCTCATGCCAATGGTTTCAGGTATTCAACGGCCAACGACCGCGTGGATGTC 525
||||| |||||||||| ||||||||| |||||||||||| ||||||| ||||| ||||||
Sbjct 412 ACACTTGAAGCTCATGTCAATGGTTTTAGGTATTCAACGACCAACGAGCGCGTTGATGTC 471
Query 526 TTGTTTGCAAACATAAAGCATGCGTTTGTCCAACCGGCTGAGAAAGAGATGACCACCCTT 585
|||||||||||||||||||||||||| | || ||||| ||||| ||||||||||||| |
Sbjct 472 CTGTTTGCAAACATAAAGCATGCGTTTTTTCAGCCGGCGGAGAAGGAGATGACCACCC-T 530
Query 586 CTT-CATTTTCATTTGCACAACCACATCATGGTAGGAACCAAGAAGACAAAGGACGTCCA 644
||| ||||||||| | ||||||||||||||||||||||||||||| ||||| ||||| ||
Sbjct 531 CTTACATTTTCATCTCCACAACCACATCATGGTAGGAACCAAGAAAACAAAAGACGTACA 590
Query 645 ATTCTATGTGGAGGTAAGGGATGTTGTGCAGTCTTTAGGTA-GTGGGAGGAGATCATCAG 703
|| ||||||||||||| ||||||||||||||||||||| | || |||||||||||||||
Sbjct 591 GTTTTATGTGGAGGTAATGGATGTTGTGCAGTCTTTAGG-AGGTAGGAGGAGATCATCAG 649
Query 704 CCTATGAT-CTAGATGAGATAGATGAAGAACAGCGAGAGCGAGATAGGAAGAACAAGATC 762
| |||||| | ||||||||| | |||||||||| ||||||| |||||||| || ||||||
Sbjct 650 CTTATGATGC-AGATGAGATTGTTGAAGAACAGAGAGAGCGCGATAGGAAAAATAAGATC 708
Query 763 AACATGGAGTTCAATCATTTTGCAAACCGGGTCAACGATATATGGAAACTACCCCAGTTT 822
|||||||| |||||||| |||||||| | |||||||||||| ||| ||||||||||||||
Sbjct 709 AACATGGATTTCAATCACTTTGCAAATCAGGTCAACGATATGTGGCAACTACCCCAGTTT 768
Query 823 GCAAGTCTGGA-CCTAGAGTTTGATCAACCTCTGAGAGAGCTTGGTTTCCATGGTGTTCC 881
|||||| | || | |||||||||||||||||||||||||| |||||||| ||||||| ||
Sbjct 769 GCAAGT-TTGAGCTTAGAGTTTGATCAACCTCTGAGAGAGTTTGGTTTCAATGGTGTCCC 827
Query 882 GCATAAGACATCTGCATTCATTATACCGACCTCTAGCTGCTTAGTTGAGCTGATAGAA-C 940
|| ||||||||| | ||||| ||||||||||| ||||||||||||||||||| |||| |
Sbjct 828 CCACAAGACATCTACCTTCATAATACCGACCTCAAGCTGCTTAGTTGAGCTGACAGAATC 887
Query 941 ACCCGTTCCTCGTGGTAAGTCTGAGTGAGATTGAGATAGTGAATCTTGAAAGAGTTGGGT 1000
||||||| | ||||| |||| |||||||||||||| ||||||||||| ||||||||||
Sbjct 888 -CCCGTTCTTGGTGGTCTGTCTAAGTGAGATTGAGATTGTGAATCTTGAGAGAGTTGGGT 946
Query 1001 TTGGGCAGAGGAGCTTTGACATGGTTATCATATTCAAGGACTTCAAAAAAGATGTT-TAT 1059
|||| || | |||||||||||||| |||||| ||||||||||| || ||||||||| | |
Sbjct 947 TTGGTCAAAAGAGCTTTGACATGGCTATCATCTTCAAGGACTTGAAGAAAGATGTTCT-T 1005
Query 1060 AGGATTGACTCAGTTCCCACAAGTTCA-CTAGAGGGGATAAAGGAGTGGCTTGACACTAT 1118
||| ||||||||||||| ||||||| | |||||||||||||||| |||||||||||||
Sbjct 1006 AGGGTTGACTCAGTTCCAACAAGTT-AGTTAGAGGGGATAAAGGAATGGCTTGACACTAC 1064
Query 1119 AGATATAAAGTACTACGAGAGCAAACTGAATCTGAACTGGAGACAGATCCTGAAGACAAT 1178
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1065 AGATATAAAGTACTACGAGAGCAAACTGAATCTGAACTGGAGACAGATCCTGAAGACGAT 1124
Query 1179 CACTGATGATCCACAGAGCTTTATAGATGATGGAGGGTGGGAGTTTTTGAACCTGAACGG 1238
||| |||||||| |||||||||| ||||| |||||| |||||||||||||| | | ||||
Sbjct 1125 CACGGATGATCCGCAGAGCTTTACAGATGCTGGAGGATGGGAGTTTTTGAATCAGGACGG 1184
Query 1239 AAGCGATTCAGAATCTGGCGGCTCTGAGGAGTCAGACAAAGGATATGAACCATCAGATGT 1298
|||||||||||| ||||||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 1185 AAGCGATTCAGAGTCTGGCGGCTCTGAGGACTCAGACAAAGGGTATGAACCATCAGATGT 1244
Query 1299 AGAGGCTGAGTCTGAGTCAGAGGATGAGG-ATTCAGAGAGTGAGTCAATGATGGAGTCAG 1357
|||| |||||||||||||||||| ||| || |||||||||||||| || | | | |
Sbjct 1245 GGAGGTTGAGTCTGAGTCAGAGGACGAGACAT-CAGAGAGTGAGTCA--GACG-A-T--G 1297
Query 1358 AGGATGAAGAAGAAGAGGACTCAGAGCAAGAGTCAGAGGAAGAGAAAGGTAAGACTTGGG 1417
| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1298 A--A-GAAGAAGAAGAGGACTCAGAGCAAGAGTCAGAGGAAGAGAAAGGTAAGACTTGGG 1354
Query 1418 ATGAACTTGAGAGAGAAGCTACTAATGCAGACAGAGAGCATGGAGTTGAGTCTGATAGCG 1477
||| || |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1355 CTGAGCTGGAGAGAGAAGCTACTAATGCAGACAGAGAGCATGGAGTTGAGTCTGATAGTG 1414
Query 1478 AGGAAGAGAGGAAGAGAAGGAAGATGAAAGCGTTTGGGAAATCGCGACCTGGAAGTAGTG 1537
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 1415 AGGAAGAGAGGAAGAGAAGGAAGATGAAAGCGTTTGGGAAATCGCGTCCTGGAAGTAGCG 1474
Query 1538 GTGGAGGCGGTAGTAGCAGCATGAAGAACATGCCACCATCTAAACGCAGCAAGCACAGGT 1597
||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 1475 GTGCAGGCGGTAGTAGCAGCATGAAGAACATGCCACCATCTAAACGCAGCAGGCACCGGT 1534
Query 1598 GA 1599
||
Sbjct 1535 GA 1536
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 78965457285
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5