BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895252
Length=1452
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2... 532 3e-150
AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2... 529 3e-149
AT4G05500.1 | Symbols: | pseudogene, F-box protein family, AtF... 110 5e-23
AT4G05460.1 | Symbols: | RNI-like superfamily protein | chr4:2... 91.6 2e-17
> AT4G05470.1 | Symbols: | RNI-like superfamily protein | chr4:2763256-2765351
REVERSE LENGTH=915
Length=915
Score = 532 bits (288), Expect = 3e-150
Identities = 405/460 (88%), Gaps = 13/460 (3%)
Strand=Plus/Plus
Query 2 TGACG-AACAAAGGAGTTATGAACGGGATCGCAAAATTTCCATTGCTTGAAACCCTCGAG 60
||||| ||| ||||||| |||||| || |||||| |||||||||||||||||||||||
Sbjct 455 TGACGAAAC-TAGGAGTTGTGAACGCAATTGCAAAAATTCCATTGCTTGAAACCCTCGAG 513
Query 61 GTCTTTCACTCATCGCT-T-AAACTGGATTTGAAAGCTATAGGCCACGTTTGCCCACAGC 118
||| |||||||| | | | ||||||||||| |||||||||||||||| |||||||||||
Sbjct 514 GTCACTCACTCAT-G-TATAAAACTGGATTTAAAAGCTATAGGCCACGCTTGCCCACAGC 571
Query 119 TAAAGACATTGAAGCTAAACTCCTTATGCTGCCCAGGGCCGGCCCA-TGGCAATTATGCC 177
|||||||||||||||||||||||||| || ||| | |||| ||| | || ||| |||| |
Sbjct 572 TAAAGACATTGAAGCTAAACTCCTTAGGCCGCCTATGGCCAGCC-AGTGACAAGTATGAC 630
Query 178 AT-AAGCCAGTTAGGCGACATGCCCCCTCTCGTCGAATGTGATGATGATGCTCTAGCAAT 236
| || | ||||| ||| ||| ||||||| ||||||||||||||||| |||||||
Sbjct 631 AGCAA-CGTGTTAGACGATATGGGGCCTCTCG---AATGTGATGATGATGCTTTAGCAAT 686
Query 237 CGCTGAAAGCATGCCCAAACTACGCCACCTCCAGCTTATGGGGAACGGACTAACCAATAC 296
|||||||||||||||||||||| ||||||||||||||||| ||| |||||||||| ||
Sbjct 687 TGCTGAAAGCATGCCCAAACTACACCACCTCCAGCTTATGGCTAACAGACTAACCAACAC 746
Query 297 AGGCTTGAATGTCATTCTCGACCGCTGTCCTCACCTGGAACACCTTGATGTACGCAAGTG 356
||||||||||| |||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct 747 AGGCTTGAATGCCATTCTCGACGGTTGTCCTCACCTGGAACACCTTGATGTACGCAAGTG 806
Query 357 TTTCAACATGAACCTTGTCGGGAATCTTGAGAAGCGATGTTTGGAGAGGATCAAAGAGTT 416
||||| || | ||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 807 TTTCAGGATTAGCCTTGTCGGGAATCTTGAGAAGCGATGTTTGGAGATGATCAAAGAGTT 866
Query 417 GAGACGCCCCGGTGACTCAACCGCCGATTACCCATATAAT 456
|||||||||||||||||||||||| |||||||||||||||
Sbjct 867 GAGACGCCCCGGTGACTCAACCGCAGATTACCCATATAAT 906
Score = 351 bits (190), Expect = 8e-96
Identities = 401/499 (80%), Gaps = 30/499 (6%)
Strand=Plus/Plus
Query 788 AAGAGCCAAGAAACTGGGCGGATCTTCCGTCGGAGTTGACGTCTTTGATCCTGATCCGTC 847
|||||| ||||||||||| |||||||||| ||||| ||||| ||| ||||||| | ||||
Sbjct 122 AAGAGCGAAGAAACTGGGTGGATCTTCCGCCGGAGCTGACGACTTCGATCCTGCTGCGTC 181
Query 848 TTAGCGTGGCTGATATTCTGAACAACGCTCAGAAGGTGTGCAGACCGTGGCGACGCGTCT 907
||||| || ||||||| ||| ||||||||||||||||||| | | |||||||||| | |
Sbjct 182 TTAGCCTGACTGATATACTGGACAACGCTCAGAAGGTGTGTAAAGAGTGGCGACGCATTT 241
Query 908 GTAAAGAACCTTCGATGTGGCGGAAAATCGACATGAGAAACCTG-ATCAGAGATAGGGGA 966
||||||| ||||||||||||||||||||| ||| | || | ||| ||| | || |
Sbjct 242 GTAAAGACCCTTCGATGTGGCGGAAAATCAACACGCGAGA-CTGCCTCA-TG-TA---CA 295
Query 967 ATGC-TCGACCCCTTGGCT-ATCATGTGCCGTCACGCCGTTGATCGCAGCGAGGGTGGTT 1024
| | | || || | | | ||||||||||||| ||||||| |||| ||||||| |
Sbjct 296 A--CTTTGA---TTTCG-TGAGCATGTGCCGTCACATTGTTGATCTCAGCCAGGGTGGCT 349
Query 1025 TGGTCA-AAATCCACCTTG--GGA-ACTTCGTCAACGATGATCTTCTCGA-CTACATCGC 1079
|| | | | ||| || ||| | | ||||| | | |||| ||| ||| | ||||||
Sbjct 350 TGCT-AGAGATCAACGTTGATGAACACTTCTTGAGCGATTCTCTCCTC-AGCTACAT--- 404
Query 1080 TGATAGGTCAAGGAATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAGGGTGACGAG 1139
| | | | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 405 T-ACCGAT--AGGAATCTGAGAAGTCTTGGACTTGGAATGTGCTTTCCAAGGGTGACGAA 461
Query 1140 GCCAGGACTTATGAATGCAATCACAAAAATTCCATTACTTGAAACCCTCGAGGTCTCACA 1199
| |||| || |||| ||||| ||||||||||||| |||||||||||||||||| | ||
Sbjct 462 ACTAGGAGTTGTGAACGCAATTGCAAAAATTCCATTGCTTGAAACCCTCGAGGTCACTCA 521
Query 1200 CTCATGTTTAAACCTG-AGTTTGGAAGATATAGGCCACGCTTGCCCACAGCTAAAGACAT 1258
||||||| |||| ||| | ||| ||| ||||||||||||||||||||||||||||||||
Sbjct 522 CTCATGTATAAAACTGGA-TTTAAAAGCTATAGGCCACGCTTGCCCACAGCTAAAGACAT 580
Query 1259 TGAAGTTAAACTCCTCAGG 1277
||||| ||||||||| |||
Sbjct 581 TGAAGCTAAACTCCTTAGG 599
> AT4G05475.1 | Symbols: | RNI-like superfamily protein | chr4:2765962-2767957
REVERSE LENGTH=930
Length=930
Score = 529 bits (286), Expect = 3e-149
Identities = 431/498 (87%), Gaps = 22/498 (4%)
Strand=Plus/Plus
Query 1 ATGACGAACAAAGGAGTTATGAACGGGATCGCA-AAATTTCCATTGCTTGAAACCCTCGA 59
||||||||||||||||| |||||||| |||| | ||| ||||| |||||||||| ||||
Sbjct 436 ATGACGAACAAAGGAGTAATGAACGGAATCG-AGAAACTTCCACTGCTTGAAACTCTCGT 494
Query 60 GGTCTTTCACTCATCGCTTAAACTGGATTTGAAAGCTATAGGCCACGTTTGCCCACAGCT 119
| |||| ||||| ||| ||||||||||||| ||||| |||||||| | |||||||| ||
Sbjct 495 GATCTTCCACTCCTCGATTAAACTGGATTTAAAAGCAATAGGCCATGCATGCCCACAACT 554
Query 120 AAAGACATTGAAGCTAAACTCCTTATGCTGCCCAGGGCCGGCCCATGGCAATTATGCCAT 179
||||||||||||||||||||||||| | || ||| || ||||||| | | |||
Sbjct 555 AAAGACATTGAAGCTAAACTCCTTA-G--GCTCAGAGCTGGCCCAT-G-----A---CAT 602
Query 180 AAGCCAGTTAGGCGACATGCCCCCTCTCGTCGAATGTGATGATGATGCTCTAGCAATCGC 239
||||||| ||||| |||| ||||| || |||||||||||||||||||||||||||||||
Sbjct 603 AAGCCAGGTAGGCTACAT-TCCCCT-TC-TCGAATGTGATGATGATGCTCTAGCAATCGC 659
Query 240 TGAAAGCATGCCCAAACTACGCCACCTCCAGCTTATGGGGAACGGACTAACCAATACAGG 299
||||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||
Sbjct 660 TGAAAGCATGCCCAAACTACGCCACCTCCAGCTTATGGGTAACGGACTAACCAACACTGG 719
Query 300 CTTGAATGTCATTCTCGACCGCTGTCCTCACCTGGAA---CACCTTGATGTACGCAAGTG 356
|||||||| |||||| ||| | ||||||||||||||| ||||||||||||||||||||
Sbjct 720 CTTGAATGCCATTCTTGACGGTTGTCCTCACCTGGAAGAACACCTTGATGTACGCAAGTG 779
Query 357 TTTCAACATGAACCTTGTCGGGAATCTTGAGAAGCGATGTTTGGAGAGGATCAAAGAGTT 416
||||||||| |||||||||||||||||||| ||||||||| || ||||||||||||||||
Sbjct 780 TTTCAACATTAACCTTGTCGGGAATCTTGAAAAGCGATGTATGAAGAGGATCAAAGAGTT 839
Query 417 GAGACG-CCCCGGTGACTCAACCGCCGATTACCCATATAATATCGGTGTGTCAGTTATGC 475
|||||| |||| ||||||||| || |||||||| |||| |||| |||||||| | ||
Sbjct 840 GAGACGGCCCCA-TGACTCAACTGCGGATTACCCGTATAGTATCAGTGTGTCAATGGTGG 898
Query 476 TTCAGATCATGATTTCAT 493
||||||| |||||| |||
Sbjct 899 TTCAGATGATGATTACAT 916
> AT4G05500.1 | Symbols: | pseudogene, F-box protein family, AtFBL9/AtFBL23,
contains similarity to N7 protein GI:3273101
from (Medicago truncatula); blastp match of 39% identity and
1.6e-34 P-value to GP|3273101|emb|CAA76808.1||Y17613 N7 protein
{Medicago truncatula} | chr4:2780170-2782675 REVERSE LENGTH=2506
Length=2506
Score = 110 bits (59), Expect = 5e-23
Identities = 103/124 (83%), Gaps = 4/124 (3%)
Strand=Plus/Plus
Query 1302 TGATGATTATGCCCTAGAAATCGCTGAAAGCATGCCAGAACTACGCCACCTCCA-CCTTT 1360
||||||| ||||| || ||| || ||||||||||| ||||||||||||||||| | |||
Sbjct 2200 TGATGATAATGCCAAAGCAATTGCAGAAAGCATGCCTGAACTACGCCACCTCCAGCTTTT 2259
Query 1361 ATGGGAACAACCTAAGTGATACA-CGCTTGTATGCCATTCTTGATGGTTGTCCTCACCTG 1419
| |||||| |||| ||| | ||||| | |||||||||||||||||||||||||||
Sbjct 2260 A-GGGAACGGGCTAACCAATA-AGGGCTTGAACGCCATTCTTGATGGTTGTCCTCACCTG 2317
Query 1420 GAAC 1423
||||
Sbjct 2318 GAAC 2321
> AT4G05460.1 | Symbols: | RNI-like superfamily protein | chr4:2760881-2762445
REVERSE LENGTH=1179
Length=1179
Score = 91.6 bits (49), Expect = 2e-17
Identities = 63/70 (90%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 678 CTCGATATCATGTGTCGTCACGCTGTTGATCGTAGCCAGGGAGGCTTGGTTGAGATCAAC 737
||||| |||||||| |||||||||||||||||||||||||||||||||||||| |||
Sbjct 277 CTCGAGATCATGTGCCGTCACGCTGTTGATCGTAGCCAGGGAGGCTTGGTTGATATCGGT 336
Query 738 ATTTGGAACT 747
|||||| |||
Sbjct 337 ATTTGGTACT 346
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71585977170
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5