BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895259
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11100.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1061 0.0
> AT4G11100.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana
protein match is: unknown protein (TAIR:AT5G03060.1);
Has 30201 Blast hits to 17322 proteins in 780 species: Archae
- 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants
- 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI
BLink). | chr4:6768614-6770184 FORWARD LENGTH=1188
Length=1188
Score = 1061 bits (574), Expect = 0.0
Identities = 781/878 (89%), Gaps = 25/878 (3%)
Strand=Plus/Plus
Query 1 ATGTTTGATCTAGAGAAACCAATTACATTGGAGCATGAAATCCTCAAGGAGAATTATGAG 60
||||||| | |||||||| | || || |||||||||||||| || ||||||||| |||||
Sbjct 120 ATGTTTGGTTTAGAGAAAACGATGACTTTGGAGCATGAAATTCTGAAGGAGAATCATGAG 179
Query 61 ACTCTGTCGAAAGATTATGAAAGTCTTCAAGAAAGGATTAAGCATGCTGAGGAAGCTTAT 120
||||||| |||||||||||| |||||||| || |||||||||||||||||||||||||||
Sbjct 180 ACTCTGTTGAAAGATTATGAGAGTCTTCAGGAGAGGATTAAGCATGCTGAGGAAGCTTAT 239
Query 121 GAGGCTATTAAGTTGCATAATGAGAACAAAGCTAAGGAGCTTGAAGTGAGTAACAAACGT 180
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 240 GAGGCTATTAAGTTGCATCATGAGAACAAAGCTAAGGAGCTTGAAGTGAGTAACAAACGC 299
Query 181 TTGCTTGAGGATTGTGTGAGAGAGAGAAGCGAGAAGGCGAAGGTTATGAAGACTTTTGAG 240
||||||||||| ||| ||| ||||||||| |||||||| ||||||| |||||||||||||
Sbjct 300 TTGCTTGAGGAATGTATGAAAGAGAGAAGGGAGAAGGCTAAGGTTAGGAAGACTTTTGAG 359
Query 241 GAGATGAAGAAGACAATGGAGAGTGAGAAG-ATTGCTATGGTTGATGAGTTGATGTCGAA 299
||||||||||||||||||||||||||| || | |||||| ||||||||||||| ||||||
Sbjct 360 GAGATGAAGAAGACAATGGAGAGTGAG-AGAACTGCTATTGTTGATGAGTTGAAGTCGAA 418
Query 300 AAATCAGGAGCTTTTGTTGGCGAA-AAGGAAAGAGGAGGAAGAGTTGGTGAAAATGGAGA 358
||||||||||||||||||| ||| || ||||||||| |||||||| ||||| |||||||
Sbjct 419 GAATCAGGAGCTTTTGTTGGGGAAGAA-GAAAGAGGAAGAAGAGTTAGTGAAGATGGAGA 477
Query 359 GGAAGTATGTTGAATTAGCTGAGAAGTTTGATGTTGTTGAAAAGGAATGTGCTTACTTGA 418
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 ATAAGTATGTTGAGTTAGCTGAGAAGTTTGATGTTGTTGAAAAGGAATGTGCTTACTTGA 537
Query 419 AGTCGCTCTATGATGCGGAAGTGGTAGCTTCGGGTACTGCAA-GTGCTGTACTGTCAGGG 477
|||| ||||||||||||||||| |||||||||| |||| ||| |||||||| | ||||||
Sbjct 538 AGTCACTCTATGATGCGGAAGTAGTAGCTTCGGTTACT-CAAAGTGCTGTAATCTCAGGG 596
Query 478 AATGGAGAGACTGATAAGATCATTGGTCAAGGAGAGAACGAGG-TGAATCATAAAGCGAA 536
||||||||||||||| | |||||||||||||||||||||| | ||||| || | |||
Sbjct 597 GTTGGAGAGACTGATAATCTTATTGGTCAAGGAGAGAACGAGGCT-AATCAGAATGTGAA 655
Query 537 CAATGCTGTAACAGATGCGATAATGATAAGTGATGATAGCGA-TGCTGAACCTGATAGGC 595
||||||||| ||||||||||||||||||||||||||| | | || | || | || |
Sbjct 656 CAATGCTGTGACAGATGCGATAATGATAAGTGATGAT-GAAAATGAT-AA--TAATC--C 709
Query 596 ATCCTCCAGTTGAGAGTAACATAAGCTCTCATCGGTCTGTTGATAGAAACCAAGAAGAAG 655
| ||| | |||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 710 A-CCT--A-TTGAGAGTAACATAAGCTCTCATCGGTCTGGTGATAGAAACCAAGAAGAAG 765
Query 656 AAGGGAGGAACAGAGCAAACACAGCAAATGAGAACCGAGCTTCGGGAGAAACCATTACCC 715
|||| |||||||||| |||| |||| | ||||||||||||||||||||||||| |||| |
Sbjct 766 AAGGCAGGAACAGAGGAAACTCAGCGACTGAGAACCGAGCTTCGGGAGAAACCTTTACTC 825
Query 716 CGGTATCTGTTAAACATCCACCGCCTTTTTCTCCTtcatcatcga-catcatcatcatca 774
||||||||| ||| |||||||||||||||||||||||||| || | | ||||||||||||
Sbjct 826 CGGTATCTGCTAATCATCCACCGCCTTTTTCTCCTTCATCGTC-ATCTTCATCATCATCA 884
Query 775 tcTTCAGATGGCTATGA-AGTTGTGGTTAAGCTGCCTCATAATTGGCCTGACTGGGCAAT 833
|||||||| ||| ||| | ||||| |||||||||||| |||||||||||| ||||||||
Sbjct 885 TCTTCAGACGGCGCTGAGA-TTGTGCTTAAGCTGCCTCGTAATTGGCCTGAATGGGCAAT 943
Query 834 CCCAAAAGGTCCGGGGAGCGG-TTCCAACAAGCCTTAG 870
||| |||||||| |||| || ||||||||||||||||
Sbjct 944 CCCGAAAGGTCCCGGGAA-GGATTCCAACAAGCCTTAG 980
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5