BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg895259 Length=870 Score E Sequences producing significant alignments: (Bits) Value AT4G11100.1 | Symbols: | unknown protein; BEST Arabidopsis tha... 1061 0.0 > AT4G11100.1 | Symbols: | unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT5G03060.1); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:6768614-6770184 FORWARD LENGTH=1188 Length=1188 Score = 1061 bits (574), Expect = 0.0 Identities = 781/878 (89%), Gaps = 25/878 (3%) Strand=Plus/Plus Query 1 ATGTTTGATCTAGAGAAACCAATTACATTGGAGCATGAAATCCTCAAGGAGAATTATGAG 60 ||||||| | |||||||| | || || |||||||||||||| || ||||||||| ||||| Sbjct 120 ATGTTTGGTTTAGAGAAAACGATGACTTTGGAGCATGAAATTCTGAAGGAGAATCATGAG 179 Query 61 ACTCTGTCGAAAGATTATGAAAGTCTTCAAGAAAGGATTAAGCATGCTGAGGAAGCTTAT 120 ||||||| |||||||||||| |||||||| || ||||||||||||||||||||||||||| Sbjct 180 ACTCTGTTGAAAGATTATGAGAGTCTTCAGGAGAGGATTAAGCATGCTGAGGAAGCTTAT 239 Query 121 GAGGCTATTAAGTTGCATAATGAGAACAAAGCTAAGGAGCTTGAAGTGAGTAACAAACGT 180 |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 240 GAGGCTATTAAGTTGCATCATGAGAACAAAGCTAAGGAGCTTGAAGTGAGTAACAAACGC 299 Query 181 TTGCTTGAGGATTGTGTGAGAGAGAGAAGCGAGAAGGCGAAGGTTATGAAGACTTTTGAG 240 ||||||||||| ||| ||| ||||||||| |||||||| ||||||| ||||||||||||| Sbjct 300 TTGCTTGAGGAATGTATGAAAGAGAGAAGGGAGAAGGCTAAGGTTAGGAAGACTTTTGAG 359 Query 241 GAGATGAAGAAGACAATGGAGAGTGAGAAG-ATTGCTATGGTTGATGAGTTGATGTCGAA 299 ||||||||||||||||||||||||||| || | |||||| ||||||||||||| |||||| Sbjct 360 GAGATGAAGAAGACAATGGAGAGTGAG-AGAACTGCTATTGTTGATGAGTTGAAGTCGAA 418 Query 300 AAATCAGGAGCTTTTGTTGGCGAA-AAGGAAAGAGGAGGAAGAGTTGGTGAAAATGGAGA 358 ||||||||||||||||||| ||| || ||||||||| |||||||| ||||| ||||||| Sbjct 419 GAATCAGGAGCTTTTGTTGGGGAAGAA-GAAAGAGGAAGAAGAGTTAGTGAAGATGGAGA 477 Query 359 GGAAGTATGTTGAATTAGCTGAGAAGTTTGATGTTGTTGAAAAGGAATGTGCTTACTTGA 418 ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 478 ATAAGTATGTTGAGTTAGCTGAGAAGTTTGATGTTGTTGAAAAGGAATGTGCTTACTTGA 537 Query 419 AGTCGCTCTATGATGCGGAAGTGGTAGCTTCGGGTACTGCAA-GTGCTGTACTGTCAGGG 477 |||| ||||||||||||||||| |||||||||| |||| ||| |||||||| | |||||| Sbjct 538 AGTCACTCTATGATGCGGAAGTAGTAGCTTCGGTTACT-CAAAGTGCTGTAATCTCAGGG 596 Query 478 AATGGAGAGACTGATAAGATCATTGGTCAAGGAGAGAACGAGG-TGAATCATAAAGCGAA 536 ||||||||||||||| | |||||||||||||||||||||| | ||||| || | ||| Sbjct 597 GTTGGAGAGACTGATAATCTTATTGGTCAAGGAGAGAACGAGGCT-AATCAGAATGTGAA 655 Query 537 CAATGCTGTAACAGATGCGATAATGATAAGTGATGATAGCGA-TGCTGAACCTGATAGGC 595 ||||||||| ||||||||||||||||||||||||||| | | || | || | || | Sbjct 656 CAATGCTGTGACAGATGCGATAATGATAAGTGATGAT-GAAAATGAT-AA--TAATC--C 709 Query 596 ATCCTCCAGTTGAGAGTAACATAAGCTCTCATCGGTCTGTTGATAGAAACCAAGAAGAAG 655 | ||| | |||||||||||||||||||||||||||||| |||||||||||||||||||| Sbjct 710 A-CCT--A-TTGAGAGTAACATAAGCTCTCATCGGTCTGGTGATAGAAACCAAGAAGAAG 765 Query 656 AAGGGAGGAACAGAGCAAACACAGCAAATGAGAACCGAGCTTCGGGAGAAACCATTACCC 715 |||| |||||||||| |||| |||| | ||||||||||||||||||||||||| |||| | Sbjct 766 AAGGCAGGAACAGAGGAAACTCAGCGACTGAGAACCGAGCTTCGGGAGAAACCTTTACTC 825 Query 716 CGGTATCTGTTAAACATCCACCGCCTTTTTCTCCTtcatcatcga-catcatcatcatca 774 ||||||||| ||| |||||||||||||||||||||||||| || | | |||||||||||| Sbjct 826 CGGTATCTGCTAATCATCCACCGCCTTTTTCTCCTTCATCGTC-ATCTTCATCATCATCA 884 Query 775 tcTTCAGATGGCTATGA-AGTTGTGGTTAAGCTGCCTCATAATTGGCCTGACTGGGCAAT 833 |||||||| ||| ||| | ||||| |||||||||||| |||||||||||| |||||||| Sbjct 885 TCTTCAGACGGCGCTGAGA-TTGTGCTTAAGCTGCCTCGTAATTGGCCTGAATGGGCAAT 943 Query 834 CCCAAAAGGTCCGGGGAGCGG-TTCCAACAAGCCTTAG 870 ||| |||||||| |||| || |||||||||||||||| Sbjct 944 CCCGAAAGGTCCCGGGAA-GGATTCCAACAAGCCTTAG 980 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 42447854215 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5