BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895260
Length=276
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11110.1 | Symbols: SPA2 | SPA1-related 2 | chr4:6771605-677... 337 4e-92
> AT4G11110.1 | Symbols: SPA2 | SPA1-related 2 | chr4:6771605-6777225
FORWARD LENGTH=3964
Length=3964
Score = 337 bits (182), Expect = 4e-92
Identities = 258/290 (89%), Gaps = 23/290 (8%)
Strand=Plus/Plus
Query 3 ACAGTCAAATTCATTTCCTGCCTTAGAAAAGATTTTTAATCGAAAATCGACGtttttttC 62
|||||||||||||||| |||||||||||||||||||| |||||||||||||| |||||
Sbjct 12 ACAGTCAAATTCATTTTCTGCCTTAGAAAAGATTTTT-ATCGAAAATCGACG-TTTTTGA 69
Query 63 AAAAACTCAAAATTTTCGTCGTTTTGTTCTCAGATttcttctactctcttcttcttct-- 120
|||||||| ||||| ||||||||||||||||||||||||||| |||||||||||||||
Sbjct 70 AAAAACTC-AAATTATCGTCGTTTTGTTCTCAGATTTCTTCTGCTCTCTTCTTCTTCTCC 128
Query 121 t-cttcttc---c-accgcctctgttgctt-atcttcttcttc-ttccttcGATTGTTGA 173
| ||||||| | |||||||||||||||| |||||||||||| ||||||||||||||||
Sbjct 129 TTCTTCTTCGTTCCACCGCCTCTGTTGCTTTATCTTCTTCTTCCTTCCTTCGATTGTTGA 188
Query 174 TTACGTCGGTGGATCTTTGTTCTT-TCTGTTGTTGTTTT--T--C-A--TT--GTCAATG 223
||||||||||||||||||||||| ||||| |||||||| | | | || |||||||
Sbjct 189 TTACGTCGGTGGATCTTTGTTCTCCTCTGT-GTTGTTTTCATTGCTAGATTTCGTCAATG 247
Query 224 ATTGGCTTCTTGCGATTCGATTTTTCCGGCTCCTGTTCTTAATTTTCTCT 273
|||||||||| ||||||||||||||||||||||||||||||||| ||||
Sbjct 248 ATTGGCTTCTCACGATTCGATTTTTCCGGCTCCTGTTCTTAATTTCCTCT 297
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 12667472748
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5