BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895265

Length=183
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT2G11005.1 | Symbols:  | glycine-rich protein | chr2:4348511-4...  71.3    3e-12


> AT2G11005.1 | Symbols:  | glycine-rich protein | chr2:4348511-4349577 
FORWARD LENGTH=513
Length=513

 Score = 71.3 bits (38),  Expect = 3e-12
 Identities = 42/44 (95%), Gaps = 0/44 (0%)
 Strand=Plus/Plus

Query  20   GTGGCTCCGGCGACGGCGGTGGCTCCGGCGACGGTGGTGGTTCC  63
            |||||||||||||||||||||||||||||||||| ||||| |||
Sbjct  83   GTGGCTCCGGCGACGGCGGTGGCTCCGGCGACGGCGGTGGCTCC  126



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 8048216160


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5