BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895283
Length=1140
Score E
Sequences producing significant alignments: (Bits) Value
AT4G34215.1 | Symbols: | Domain of unknown function (DUF303) ... 147 3e-34
AT4G26810.1 | Symbols: | SWIB/MDM2 domain superfamily protein ... 65.8 9e-10
> AT4G34215.1 | Symbols: | Domain of unknown function (DUF303)
| chr4:16380077-16381307 REVERSE LENGTH=1024
Length=1024
Score = 147 bits (79), Expect = 3e-34
Identities = 90/95 (95%), Gaps = 2/95 (2%)
Strand=Plus/Plus
Query 91 CGTTTGATTAAGAACCTCCGTCATGATCTCAACCTTCCTTCTCTTCCCATTATTCAGGTA 150
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 650 CGTTTGATTAAGAACCTCCGTCATGATCTCAACCTTCCTTCTCTTCCCATTATTCAGGTG 709
Query 151 GCAATTGCACATCGGGAGGAGGATACAGAGATAAG 185
||||| ||| |||||||||||||||| |||||||
Sbjct 710 GCAATAGCA--TCGGGAGGAGGATACATAGATAAG 742
> AT4G26810.1 | Symbols: | SWIB/MDM2 domain superfamily protein
| chr4:13492078-13492932 REVERSE LENGTH=640
Length=640
Score = 65.8 bits (35), Expect = 9e-10
Identities = 35/35 (100%), Gaps = 0/35 (0%)
Strand=Plus/Plus
Query 55 GATCCTAAGAACAAGAATGTGGTGATTTGTGATGA 89
|||||||||||||||||||||||||||||||||||
Sbjct 325 GATCCTAAGAACAAGAATGTGGTGATTTGTGATGA 359
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 55923407130
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5