BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895286

Length=324
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11270.1 | Symbols:  | Transducin/WD40 repeat-like superfami...   106    1e-22


> AT4G11270.1 | Symbols:  | Transducin/WD40 repeat-like superfamily 
protein | chr4:6854364-6859664 FORWARD LENGTH=4612
Length=4612

 Score =  106 bits (57),  Expect = 1e-22
 Identities = 106/128 (83%), Gaps = 9/128 (7%)
 Strand=Plus/Plus

Query  2    TGTGG-CATACTGCTCCTATAGTGGATCTTGATGTTTGTGATCCTACAATGGTTTCAGGG  60
            ||||| |||||| | || ||||||||||||| | ||||||||||||||||  ||||| | 
Sbjct  302  TGTGGCCATACTTCACCAATAGTGGATCTTGCTATTTGTGATCCTACAATACTTTCAAGT  361

Query  61   AATGGACTTACATCAGATTG-TTCGGATACTGGTAATGCGGATCCATTTGTTAACTGTTG  119
            ||||||  |   |  | |||  || |||| ||||||||||||||||||||||||||||||
Sbjct  362  AATGGA-GT---T--G-TTGCATCAGATAATGGTAATGCGGATCCATTTGTTAACTGTTG  414

Query  120  TGCATTGA  127
            ||||||||
Sbjct  415  TGCATTGA  422


 Score = 56.5 bits (30),  Expect = 1e-07
 Identities = 30/30 (100%), Gaps = 0/30 (0%)
 Strand=Plus/Plus

Query  242   TGATTCTCCTGCTTCAAGCCCGAGATCAGA  271
             ||||||||||||||||||||||||||||||
Sbjct  1609  TGATTCTCCTGCTTCAAGCCCGAGATCAGA  1638



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15080324700


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5