BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895293

Length=288
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G08390.1 | Symbols: SAPX | stromal ascorbate peroxidase | ch...   291    3e-78


> AT4G08390.1 | Symbols: SAPX | stromal ascorbate peroxidase | 
chr4:5314905-5317456 FORWARD LENGTH=1516
Length=1516

 Score =  291 bits (157),  Expect = 3e-78
 Identities = 235/273 (86%), Gaps = 3/273 (1%)
 Strand=Plus/Plus

Query  18   TACAAAATATTCAGCTTGGGATCCTGATCAGTTGAA-AAGTGCTAGAGAAGATATCAAAG  76
            ||| |||| |||| |||  ||||||||||||||||| ||  |||||||||||||||||||
Sbjct  382  TACTAAATCTTCATCTTCAGATCCTGATCAGTTGAAGAA-CGCTAGAGAAGATATCAAAG  440

Query  77   AGCTGCTCAATTTCAAATTCTGCCATCCAATTTTGGTTCGGTTAGGGTGGCATGATGTTG  136
            |||| ||||    ||||||||||||||| ||||||||| | ||||| |||||||||| ||
Sbjct  441  AGCTTCTCAGCACCAAATTCTGCCATCCGATTTTGGTTAGATTAGGTTGGCATGATGCTG  500

Query  137  GAACGTTTAACAAGAACATCACGGTATGTCCACAGAGAGGTGGAGCTATTGGAAGTCTCA  196
            | |||| |||||||||||| | || ||| ||||| ||||||||||||| ||||||| | |
Sbjct  501  GTACGTATAACAAGAACATTAAGGAATGGCCACAAAGAGGTGGAGCTAATGGAAGTTTGA  560

Query  197  TATTTGAGATTGCGCTTAAACATGCTGCTAATGCCGGTCTTGTAAATGCTTTAAACTTGA  256
             ||| || |||| |||||||||||||||||| || |||||||| ||||||||||||||||
Sbjct  561  GATTCGATATTGAGCTTAAACATGCTGCTAACGCTGGTCTTGTGAATGCTTTAAACTTGA  620

Query  257  TTAAGGATATCAAAGAAAAATACTCTTGG-TCA  288
            |||||||||||||||| ||||||||| || |||
Sbjct  621  TTAAGGATATCAAAGAGAAATACTCTGGGATCA  653



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13270685736


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5