BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895302
Length=516
Score E
Sequences producing significant alignments: (Bits) Value
AT4G07965.1 | Symbols: | unknown protein; Has 30201 Blast hits... 222 2e-57
> AT4G07965.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:4808635-4809352
FORWARD LENGTH=423
Length=423
Score = 222 bits (120), Expect = 2e-57
Identities = 170/194 (88%), Gaps = 4/194 (2%)
Strand=Plus/Plus
Query 108 TGGGAGACGTTTCCACGAGACTCCGACGGTAAGAGCTCTACTGGCGGAGTTACGATGCGG 167
|||| ||| |||||| ||||||| | |||||||||||||| || ||| || || || ||
Sbjct 99 TGGGGGACAATTCCACAAGACTCCAAAGGTAAGAGCTCTACCGGTGGAATTGCGTTGTGG 158
Query 168 TGTGGAAGAAGGAGACTTCACGGCGAGGAACGAAAGAGGAAGGTGGTTAAATTTGGGGTC 227
|||||||||||||||||||||||||||||||||||||| |||||||||| ||| || ||
Sbjct 159 TGTGGAAGAAGGAGACTTCACGGCGAGGAACGAAAGAGAAAGGTGGTTAGATTCGGAGTG 218
Query 228 TGGCGACGCAGGAGGTCTCACGAGG-CTATCGGTTCAC-GGGGGAGGTCGTCTGTGGTCC 285
|||||||||||||| | ||||| || |||| ||||| | |||||||||||||||||||||
Sbjct 219 TGGCGACGCAGGAGATTTCACG-GGACTATTGGTTC-CTGGGGGAGGTCGTCTGTGGTCC 276
Query 286 GGTGAAGCTATGCC 299
||||||||||||||
Sbjct 277 GGTGAAGCTATGCC 290
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 24664966177
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5