BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg895302 Length=516 Score E Sequences producing significant alignments: (Bits) Value AT4G07965.1 | Symbols: | unknown protein; Has 30201 Blast hits... 222 2e-57 > AT4G07965.1 | Symbols: | unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr4:4808635-4809352 FORWARD LENGTH=423 Length=423 Score = 222 bits (120), Expect = 2e-57 Identities = 170/194 (88%), Gaps = 4/194 (2%) Strand=Plus/Plus Query 108 TGGGAGACGTTTCCACGAGACTCCGACGGTAAGAGCTCTACTGGCGGAGTTACGATGCGG 167 |||| ||| |||||| ||||||| | |||||||||||||| || ||| || || || || Sbjct 99 TGGGGGACAATTCCACAAGACTCCAAAGGTAAGAGCTCTACCGGTGGAATTGCGTTGTGG 158 Query 168 TGTGGAAGAAGGAGACTTCACGGCGAGGAACGAAAGAGGAAGGTGGTTAAATTTGGGGTC 227 |||||||||||||||||||||||||||||||||||||| |||||||||| ||| || || Sbjct 159 TGTGGAAGAAGGAGACTTCACGGCGAGGAACGAAAGAGAAAGGTGGTTAGATTCGGAGTG 218 Query 228 TGGCGACGCAGGAGGTCTCACGAGG-CTATCGGTTCAC-GGGGGAGGTCGTCTGTGGTCC 285 |||||||||||||| | ||||| || |||| ||||| | ||||||||||||||||||||| Sbjct 219 TGGCGACGCAGGAGATTTCACG-GGACTATTGGTTC-CTGGGGGAGGTCGTCTGTGGTCC 276 Query 286 GGTGAAGCTATGCC 299 |||||||||||||| Sbjct 277 GGTGAAGCTATGCC 290 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 24664966177 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5