BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895306
Length=975
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11340.1 | Symbols: | Disease resistance protein (TIR-NBS-L... 1280 0.0
> AT4G11340.1 | Symbols: | Disease resistance protein (TIR-NBS-LRR
class) family | chr4:6894208-6899130 REVERSE LENGTH=1488
Length=1488
Score = 1280 bits (693), Expect = 0.0
Identities = 911/1009 (90%), Gaps = 44/1009 (4%)
Strand=Plus/Plus
Query 1 GATGATGATGAATTGGTGATGAATGATGAACATCAATATCATCATCATCTAGACCTAGAC 60
|||||||||||| ||| | || ||||| | |||| | ||| |||||||||||||||||
Sbjct 424 GATGATGATGAA-TGG-G-TG-ATGATCATCATC-A-CGCATTATCATCTAGACCTAGAC 477
Query 61 AAAACTGAAATAATAGAGTGCAAAGCGGTTGCAGCGATCCGCGATTTGATCTGCCCGCGT 120
||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 AAAACCGAAATGATAGAGTGCAAAGCGGTTGCAGCGATCCGCGATTTGATCTGCCCGCGT 537
Query 121 CTTGGAATCAT-C------C-T-------AGCGGTTGAGACACGGATTATGGTGTTGCTA 165
||||||||||| | | | |||||| |||| || |||||||||||||||
Sbjct 538 CTTGGAATCATCCGAAGTTCTTCAGAAGGAGCGGTAGAGATACATATTATGGTGTTGCTA 597
Query 166 GTGGAAGC-G---AG---C-T--GT-G-T--TA-AG-A--TATTGG-CGATGAAGGGCAT 206
|||||||| | | | | || | | | || | |||||| || |||||||||
Sbjct 598 GTGGAAGCTGCTTGGTTTCTTGAGTCGCTGACAGAGAAGGTATTGGCCG-TGAAGGGCAG 656
Query 207 AGCTCCGCCGCAACATCAAGTGTTCGTAAGTTTCCGAGGCAGCGACGTCCGCTATAACTT 266
||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 657 AGCTCCGCCCCAACATCAAGTGTTTGTAAGTTTCCGAGGCAGCGACGTTCGCTATAACTT 716
Query 267 CTTCAGCTTTCTCAAAGATGCATTGGTAAAGAACGGTATCAATGTGGTAACGGACGAGGA 326
|||||||||||| ||||| |||||| ||||||| |||||||| |||||||||||||||||
Sbjct 717 CTTCAGCTTTCTTAAAGACGCATTGATAAAGAATGGTATCAACGTGGTAACGGACGAGGA 776
Query 327 CGCACCTAGGGGAAAACCCATCGATGAGAATCTTTTGAAGCTTATAAAAGACTCGAGGAT 386
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 777 CGCACCTAGGGGAAAACCAATCGATGAGAATCTTTTGAAGCTTATAAAAGACTCGAGGAT 836
Query 387 CGCTATTGTGATCTTCTCCGAAAACTATCCCGAATCGACTTGGTGTTTAGACGAGTTGGT 446
|||| | ||||||||||| ||||||||||| || || |||||||| ||||||||||||||
Sbjct 837 CGCTGTCGTGATCTTCTCGGAAAACTATCCGGAGTCCACTTGGTGCTTAGACGAGTTGGT 896
Query 447 GGAGATCGAGAAACAAATGGACCTTAAGATGCTTGATTCTTGTCCTATCTTTTTTGAGGT 506
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 897 GGAGATCGAGAAACAAATGGATCTTAAGATGCTTGATTCTTGTCCTATCTTTTTTGAGGT 956
Query 507 TGAGACTTGTCACGTTAAACTTCAAGTCGCGAGAAGTACTTTCAACAACAATCTACTGCA 566
|||||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||
Sbjct 957 TGAGACTTGTCACGTTAAACTTCAGGTCGCAAGAAGTACTTTCAACTACAATCTACTGCA 1016
Query 567 GTTGGAGCATGATGAGCGGAAAAAAGCTAGGCAGATTAGTAAGAAGGCTTGGGAGGATGC 626
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 1017 GTTGGAGCACGATGAGCGGAAGAAAGCTAGGCAGATTAGTAAGAAGGCTTGGGAGGATGC 1076
Query 627 AGAGAAGAGATTCGAGGGATGGAGAAAAGCTTTGATTTCGGTCTCGTCTCGCTTGGGCTT 686
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1077 AGAGAAGAGATTCGAAGGATGGAGAAAAGCTTTGATTTCGGTCGCGTCTCGCTTGGGCTT 1136
Query 687 AACATATAAGAAGGG-A--AACCAAGCAACCTTCGTAAATGAAATCGTCCAGAAGGTTAA 743
||||||||||||||| | |||||||||||||||||||||||||||||| ||||||||||
Sbjct 1137 AACATATAAGAAGGGGAGCAACCAAGCAACCTTCGTAAATGAAATCGTCGAGAAGGTTAA 1196
Query 744 GGCAATGCTGGATAACGTTTCCTCACCACACATTGTGCCGCAACATCAAGTGTACATAAG 803
||||||||| || |||||||||||| |||||||| ||||||||||||||| ||||||||
Sbjct 1197 GGCAATGCTTGACAACGTTTCCTCATCACACATTACGCCGCAACATCAAGTTTACATAAG 1256
Query 804 TTTCCGGAGTCAAGAGATCCGCAACAAGTTCTCCAGCCTTCTTAGAGCCGCTTTACGAAG 863
||| ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 1257 TTTTCGGAGTCGAGAGATCCGCAACAAGTTCTCCAGCCTTCTTAGAGCCGCGTTACGAAG 1316
Query 864 GAGTGGGATCAACGTCTTTCTAGATGATGAAAATATTACTAGAATAGAGTCGAGAGACGA 923
|||||||||||||||| ||||||||||||||||||| ||| |||||||||| ||||||||
Sbjct 1317 GAGTGGGATCAACGTCCTTCTAGATGATGAAAATATCACTCGAATAGAGTCAAGAGACGA 1376
Query 924 AGTTGATAGACTTTTTTGTCGAGTCTCGAGAGTCAAGGATCGAACTAGT 972
|||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1377 AGTTGATAGACTTTTTTGTCGAGTTTCGAGAGTGAAGGATCGAACTAGT 1425
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 47722439650
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5