BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895312
Length=237
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11393.1 | Symbols: | Defensin-like (DEFL) family protein |... 344 2e-94
> AT4G11393.1 | Symbols: | Defensin-like (DEFL) family protein
| chr4:6932370-6932718 FORWARD LENGTH=237
Length=237
Score = 344 bits (186), Expect = 2e-94
Identities = 221/238 (93%), Gaps = 2/238 (1%)
Strand=Plus/Plus
Query 1 ATGGCAAAGATTCAAAACTCTGTTTGCTTCACCGCCGTCTTGCTCATCCTCATATTGGTT 60
|||||||||| |||||||| ||||||||||||||||||||||||||||||||| |||||
Sbjct 1 ATGGCAAAGACTCAAAACTTTGTTTGCTTCACCGCCGTCTTGCTCATCCTCATTTTGGTC 60
Query 61 TCAACCGAGATACCAAAGATTGAAGGG-AAAACATGTAAGCTTTTTAGAGGAGAATGTCC 119
|| ||||||||||||| ||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 61 TCGACCGAGATACCAATGATTG-AGGGAAAAACATGTAAGCTTTTTAGAGGAGAATGTCC 119
Query 120 TGTGGATCCGTGTGAACCTGCAAAATGCGACGAATGTTGCAAAGCAGCGTTTGGGAAACA 179
||||||||||| ||||||| |||||| || || |||||||| ||| |||||||||||||
Sbjct 120 CGTGGATCCGTGCGAACCTGAAAAATGTGATGAGTGTTGCAAGGCAACGTTTGGGAAACA 179
Query 180 AATTTGTGGAAAATGCGAACAAGAGAGCACCGAATTACATTGTCATTGTCGCCGCTAA 237
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 180 AATTTGTGGAAAATGCGAACAAGAGAGCACTGAATTACATTGTCATTGTCGCCGCTAA 237
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 10707030537
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5