BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895326
Length=2025
Score E
Sequences producing significant alignments: (Bits) Value
AT4G23310.1 | Symbols: CRK23 | cysteine-rich RLK (RECEPTOR-like... 422 8e-117
AT4G23280.1 | Symbols: CRK20 | cysteine-rich RLK (RECEPTOR-like... 416 4e-115
> AT4G23310.1 | Symbols: CRK23 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 23 | chr4:12185737-12188763 FORWARD LENGTH=2493
Length=2493
Score = 422 bits (228), Expect = 8e-117
Identities = 572/731 (78%), Gaps = 52/731 (7%)
Strand=Plus/Plus
Query 1029 TGATCTTAAGACAATCGAAGCTGCAACAAATAA-TTTTTCGGGC-AACAACAAACTTGGT 1086
|||| ||||| |||| | || ||||| ||||| ||||| | | | ||||| ||||||
Sbjct 1488 TGATTTTAAGGCAATTGTGGCAGCAACGAATAACTTTTT--GCCGATTAACAAGCTTGGT 1545
Query 1087 CAAGGTGGATTCGGCGAAGTTTACAAGGGTACATTTCC-AGATGGAACTGA-AA-TTGCG 1143
|||||||||||||||||||||||||||||||||||||| || |||| | | || |||||
Sbjct 1546 CAAGGTGGATTCGGCGAAGTTTACAAGGGTACATTTCCTAG-TGGAG-T-ACAAGTTGCG 1602
Query 1144 GTTAAGAGACTATCAATA-ACTTCAAGACAAGGCTTGCA-G-GAGTTC-ACGAACGAGGT 1199
|| ||||| ||||||| | || || ||||||| | | | | |||||| | ||||| ||
Sbjct 1603 GTGAAGAGGCTATCAA-AGACATCTGGACAAGG-T-GAAAGAGAGTTCGAA-AACGAAGT 1658
Query 1200 CAATGTCCTGTTAAAGCTTCAGCATA-ATAATCTAGTTGAG-CTTCTTGGGTATTG-CTT 1256
||| || |||||||||||||| | ||||| || || || ||||| ||||| ||
Sbjct 1659 TGTTGTTGTGGCAAAGCTTCAGCATAGA-AATCTGGTA-AGGCTGCTTGGTTATTGTCT- 1715
Query 1257 GGAAGGAGAAGAGAAGATACTCGTCTATGAGTTTTTGTC-CAACAAAAGCCTCGATTT-T 1314
|||||||||||||||||| || ||||| |||||| || | ||||||||||||||||| |
Sbjct 1716 GGAAGGAGAAGAGAAGATTCTTGTCTACGAGTTTGTG-CACAACAAAAGCCTCGATTACT 1774
Query 1315 TTCCTCTTTGACACTATGAACCAACGGCAGCTAGACTGGAC-CAAACGGTACAATATCAT 1373
||| | |||||||||| || |||| |||||||||||||| | | |||||||| |||||
Sbjct 1775 TTCTT-TTTGACACTACGATGAAACGACAGCTAGACTGGACACGA-CGGTACAAGATCAT 1832
Query 1374 CGAAGGGATTGCTCGAGGGATTCTGTATCTTCATCGAGATTCACGGCACAAAATCATACA 1433
| ||| |||||| |||| ||||| |||||||||| ||||||||| | || |||||||||
Sbjct 1833 TGGAGGAATTGCTAGAGGAATTCTTTATCTTCATCAAGATTCACGACTCACAATCATACA 1892
Query 1434 CCGTGATCTGAAAGTAAGCAACATCCTTCTAG-ATGCTGATATGAACCCCAAAATCGCGG 1492
||||| || |||| |||||||||| || | | |||||||||||||||||| | || |
Sbjct 1893 TCGTGACCTCAAAGCGGGCAACATCCT-CTTGGACGCTGATATGAACCCCAAAGTTGCAG 1951
Query 1493 ACTTCGGCCTAGCAAAGATTTTTGCAATGGAGCAAACTCGA-GCCGAGACTAGCAAGA-T 1550
| || || | || | |||||||| ||||| ||||| || ||| | || || |||| |
Sbjct 1952 ATTTTGGAATGGCGAGGATTTTTGGGATGGACCAAACA-GAAGCCAATACGAG-AAGAGT 2009
Query 1551 AGCTGG-AACCTATGGTTACATGGCGCCCGAGTAT-CGAATGCACGGTCAGTTCTCAATG 1608
| ||| |||||||||||||||||| ||||||||| | | || |||| |||||||| |||
Sbjct 2010 TG-TGGGAACCTATGGTTACATGGCTCCCGAGTATGCTA-TGTACGGCCAGTTCTCCATG 2067
Query 1609 GAATCTGATATCTATAGCTTTGGAGTCTTGGT-TCTTGAGATAATAAACGGCAAGACATG 1667
|||| ||| | || || ||||| ||||| || | ||||||| |||| ||||| || | |
Sbjct 2068 AAATCAGATGTGTACAGTTTTGGTGTCTTAGTAT-TTGAGATTATAAGCGGCATGA-A-G 2124
Query 1668 TAGCAGCA-T-T-TACCAAACAGATGGA-ACTTCTT-GCAATTTGGTCACATATGCTTGG 1722
| ||| | | | || |||| |||| | | | || |||| ||||| |||||| |||||
Sbjct 2125 AA-CAGTAGTCTCTATCAAATGGATG-ATAGTG-TTAGCAACTTGGTTACATATACTTGG 2181
Query 1723 AGACTGTGGAG 1733
||||| |||||
Sbjct 2182 AGACTATGGAG 2192
> AT4G23280.1 | Symbols: CRK20 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 20 | chr4:12174740-12177471 FORWARD LENGTH=1971
Length=1971
Score = 416 bits (225), Expect = 4e-115
Identities = 654/851 (77%), Gaps = 70/851 (8%)
Strand=Plus/Plus
Query 1075 AACAAACTTGGTCAAGGTGGATTCGGCGAAGTTTACAAGGGTACATTTCC-AGATGGAAC 1133
||||| |||||||||||||| ||||||||||||||||||||||||||||| || ||||
Sbjct 1012 AACAAGCTTGGTCAAGGTGGTTTCGGCGAAGTTTACAAGGGTACATTTCCTAG-TGGAG- 1069
Query 1134 TGA-AA-TTGCGGTTAAGAGACTATC-AATAACTTCAAGACAAGGCTTGCAG--GAGTTC 1188
| | || ||||||| ||||||||||| || || |||| ||||||| | | | |||||
Sbjct 1070 T-ACAAGTTGCGGTGAAGAGACTATCGAAGAA-TTCAGGACAAGG-T-GAAAAAGAGTTT 1125
Query 1189 -ACGAACGAGGTCAATGTCCTGTT--AAAGCTTCAGCATA-ATAATCTAGTTGAGCTTCT 1244
| ||||| || ||| |||| |||||| || |||| | ||| |||| | || ||
Sbjct 1126 GAA-AACGAAGTTGTTGT--TGTTGCAAAGCTCCAACATAGA-AATTTAGTAAAACTGCT 1181
Query 1245 TGGGTATTGCTTGGAAGGAGAAGAGAAGATACTCGTCTATGAGTTTTTGTCCAA-CAAAA 1303
||| ||||| |||||||||||||| |||||||| ||||| |||||| | |||| |||||
Sbjct 1182 TGGTTATTGTTTGGAAGGAGAAGAAAAGATACTTGTCTACGAGTTTGTA-CCAAACAAAA 1240
Query 1304 GCCTCGATTT-TTTCCTCTTTGACACTATGAACCAACGGCAGCTAGACTGGACCAA-ACG 1361
||||||||| |||| | |||||| ||| || ||| |||||||||||||| | || |||
Sbjct 1241 GCCTCGATTACTTTCTT-TTTGACCCTACGATGCAAGGGCAGCTAGACTGGTC-AAGACG 1298
Query 1362 GTACAATATCATCGAAGGGATTGCTCGAGGGATTCTGTATCTTCATCGAGATTCACGGCA 1421
|||||| ||||| | ||| |||||| |||| ||||| |||||||||| ||||||||| |
Sbjct 1299 GTACAAGATCATTGGAGGAATTGCTAGAGGAATTCTTTATCTTCATCAAGATTCACGACT 1358
Query 1422 CAAAATCATACACCGTGATCTGAAAGTAAGCAACATCCTTCTAG-ATGCTGATATGAACC 1480
|| ||| |||||||| || || |||| |||||||||| || | | |||||||||||||
Sbjct 1359 CACAATTATACACCGGGACCTCAAAGCGGGCAACATCCT-CTTGGACGCTGATATGAACC 1417
Query 1481 CCAAAA-TCGCGGACTTCGGCCTAGCAAAGATTTTTGCAATGGAGCAAACTCGA-GCCGA 1538
| |||| | || || || || | || | |||||||| ||||| ||||| || ||| |
Sbjct 1418 C-AAAAGTTGCAGATTTTGGAATGGCGAGGATTTTTGGGATGGACCAAACA-GAAGCCAA 1475
Query 1539 GACTAGCAAGA-TAGCTGG-AACCTATGGTTACATGGCGCCCGAGTAT-CGAATGCACGG 1595
|| || |||| | | ||| |||||||||||| ||||| ||||||||| | | || ||||
Sbjct 1476 TACGAG-AAGAGTTG-TGGGAACCTATGGTTATATGGCTCCCGAGTATGCTA-TGTACGG 1532
Query 1596 TCA-GTTCTCAATGGAATCTGATATCTATAGCTTTGGAGTCTTGGTTCTTGAGATAATAA 1654
|| |||||| ||| |||| ||| | ||||| ||||| ||||||||||||||||| |||
Sbjct 1533 -CAAGTTCTCCATGAAATCAGATGTGTATAGTTTTGGGGTCTTGGTTCTTGAGATTGTAA 1591
Query 1655 ACGGCA--A-GA-CATGTAGCAGCATTTACCAAACAGATGGAA-CTTCTTGCAATTTGGT 1709
||||| | || || ||||| | | | |||| ||||| | | | | |||| |||||
Sbjct 1592 GCGGCATGAAGAACA-GTAGC--C-TCGATCAAATGGATGGTAGCAT-TAGCAACTTGGT 1646
Query 1710 CACATATGCTTGGAGACTGTGGAGGAAAGGTTTGGCTTTAGAACTCATGGACTC-GACTT 1768
|||||| |||||||||| ||||| || || | | | | ||| || |||| || | | |
Sbjct 1647 TACATATACTTGGAGACTATGGAGCAATGGGTCGCCATCAGAGCTTGTGGA-TCCGTCAT 1705
Query 1769 TTG-AGGA-AGACTATCAAA---GCGAAAA-AGTCGATAGGTGCATTCATATCGCGCTTT 1822
||| || | | | ||||||| |||||| | | ||||||||| |||||||| |||
Sbjct 1706 TTGGAG-ATA-ATTATCAAACAAGCGAAATTA--C--TAGGTGCATCCATATCGC--TTT 1757
Query 1823 --TATGTGTGCAAGAAAACCCCGCTGATCGTCCAAATTTGTCTACAATCATCTCGA-TGC 1879
||||||| |||||| | | ||||||||||| | ||||| ||||| || | | |||
Sbjct 1758 ACTATGTGTTCAAGAAGATGCTAATGATCGTCCAACTATGTCTGCAATCGTC-CAAATGC 1816
Query 1880 TCACTAGTAGC 1890
|||||| ||||
Sbjct 1817 TCACTACTAGC 1827
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 100350889455
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5