BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895328
Length=819
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11530.1 | Symbols: CRK34 | cysteine-rich RLK (RECEPTOR-like... 750 0.0
AT4G23230.1 | Symbols: CRK15 | cysteine-rich RLK (RECEPTOR-like... 337 1e-91
AT4G11500.1 | Symbols: | pseudogene, similar to putative recep... 254 1e-66
> AT4G11530.1 | Symbols: CRK34 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 34 | chr4:6987093-6989599 FORWARD LENGTH=2010
Length=2010
Score = 750 bits (406), Expect = 0.0
Identities = 587/674 (87%), Gaps = 13/674 (2%)
Strand=Plus/Plus
Query 75 AGAAAAAATACTCGTTTACGAGTTTGTACCTAACAAAAGCCTTGATTATTTCCTGTTCGA 134
|||||| |||||||| || ||||||||||| |||||||||||||| ||||| || || ||
Sbjct 1236 AGAAAAGATACTCGTCTATGAGTTTGTACCCAACAAAAGCCTTGACTATTTTCTCTTTGA 1295
Query 135 CCCTGCAAAGCGAGGCGAACTGA-ACTGGACAAGACGGTACCACATTATTGCAGGGATTG 193
||||||||| | ||| ||||| | | ||||||||||||||| | || |||| |||||||
Sbjct 1296 CCCTGCAAAACAAGGTGAACT-AGATTGGACAAGACGGTACAATATCATTGGGGGGATTG 1354
Query 194 CTCGAGGAATTATGTATCTTCATCATGATTCACGTCTTACAATCATACACCGTGATCTGA 253
||||||||||| | ||||||||||| |||||||| ||||||||||||||||||||||| |
Sbjct 1355 CTCGAGGAATTCTATATCTTCATCAAGATTCACGGCTTACAATCATACACCGTGATCTCA 1414
Query 254 AAGCAAGTAACATTCTCTTAGATGCCGACATGAACCCCAAAATCGCAGATTTTGGCATGG 313
|||| |||||||||||||||||||| || |||||||||||||| ||||||||||||||||
Sbjct 1415 AAGCGAGTAACATTCTCTTAGATGCTGATATGAACCCCAAAATTGCAGATTTTGGCATGG 1474
Query 314 CGAGGATTTACAGAATTGATCAAACTCATGCCAACACAA-ATAGAATCGTTGGAACATAT 372
||||||||| || ||||||||| ||| |||||||||| | ||||||| ||||||| |
Sbjct 1475 CGAGGATTTTTGGAGTTGATCAAAGTCAAGCCAACACAAGA-AGAATCGCCGGAACATTT 1533
Query 373 GGTTATATGTCTCCAGAATATGCAATGCGTGGCCATTTCTCCATGAAATCTGATGTCTAT 432
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1534 GGTTATATGTCTCCAGAATATGCAATGCGTGGCCATTTCTCCATGAAGTCTGATGTCTAT 1593
Query 433 AGCTTTGGTGTAATGATTCTAGAGATCATAAGTGGCAAAATGAATAGCAGCTTCTACGAC 492
|||||||| ||| || | |||||||| ||||||||||||| ||||||||| |||||| ||
Sbjct 1594 AGCTTTGGAGTATTGGTACTAGAGATTATAAGTGGCAAAAAGAATAGCAGTTTCTACAAC 1653
Query 493 ATTGATGATTCTCCTAGCAATTTGGTCACACATGCTTGGA-AGCTTTGGAGAACA-GGGT 550
|||||||||||| |||||||||||| ||||| ||||||| | |||||||||| | ||||
Sbjct 1654 ATTGATGATTCTGGTAGCAATTTGGTAACACACGCTTGGAGA-CTTTGGAGAA-ATGGGT 1711
Query 551 CACAATTAGAACTCGTGGATCCGACAATAGGTGAGAGTTCCCCGAGTAACGAGGCTATTA 610
||| |||||||| |||||||| || ||||| || |||| | ||||| |||||||| ||
Sbjct 1712 CACCGTTAGAACTGGTGGATCCAACCATAGGAGAAAGTTATCAGAGTAGCGAGGCTACTA 1771
Query 611 TTAGATTCATCCATATCGCACTTTTATGTGTTCAAGAAGATCCTGCAGATCGACCAATGT 670
||| ||||||||||||||| ||||||||||||||||||||||||||||| ||| |||
Sbjct 1772 ---GATGCATCCATATCGCACTATTATGTGTTCAAGAAGATCCTGCAGATCGTCCATTGT 1828
Query 671 TGCCAGCAATCGTCGTGATGCTCACTAGTAATACAGAC-ACTTTACCTGTGCCTCGAGCA 729
| ||||| ||| || ||||||| ||||||| ||| || ||||||| ||||||||||||
Sbjct 1829 TACCAGCGATCATCATGATGCTTACTAGTAGCACA-ACCACTTTACATGTGCCTCGAGCG 1887
Query 730 CCCGGCTTTTGCCT 743
||||| ||||||||
Sbjct 1888 CCCGGATTTTGCCT 1901
Score = 93.5 bits (50), Expect = 3e-18
Identities = 60/65 (92%), Gaps = 0/65 (0%)
Strand=Plus/Plus
Query 1 ATGGTATGTGCATCCCTGGGACTAAACCAGAGACTTGCTCAGATTGCATCAAAGGCGCAT 60
|||| |||||||||||||||||||||||||||||||| |||||||| || ||||| ||||
Sbjct 221 ATGGCATGTGCATCCCTGGGACTAAACCAGAGACTTGTTCAGATTGTATTAAAGGTGCAT 280
Query 61 CAGAC 65
|||||
Sbjct 281 CAGAC 285
> AT4G23230.1 | Symbols: CRK15 | cysteine-rich RLK (RECEPTOR-like
protein kinase) 15 | chr4:12157569-12160270 REVERSE LENGTH=2133
Length=2133
Score = 337 bits (182), Expect = 1e-91
Identities = 509/664 (77%), Gaps = 34/664 (5%)
Strand=Plus/Plus
Query 75 AGAAAAAATACTCGTTTACGAGTTTGTACCTAACAAAAGCCTTGATTA-TTTCCTGTTCG 133
||||| ||| | || ||||||| | | || ||||||||||||||||| ||| || || |
Sbjct 1203 AGAAAGGATATTGGTCTACGAGTATATGCCCAACAAAAGCCTTGATTACTTT-CTCTTTG 1261
Query 134 ACCCTGCAAAGC-GAGGCGAACTGAACTGGACAAGACGGTACCACATTATTGCAGGGATT 192
| ||||| |||| | | | ||| ||||||| |||| ||| | | |||| |||||||
Sbjct 1262 ATCCTGCGAAGCAAAATC-AGCTGGACTGGACTCGACGATACAAGGTCATTGGAGGGATT 1320
Query 193 GCTCGAGGAATTATGTATCTTCATCATGATTCACGTCTTACAATCATACACCGTGATCTG 252
|||||||||||| | ||||||||||| |||||| | || ||||||||||||||||| ||
Sbjct 1321 GCTCGAGGAATTTTATATCTTCATCAAGATTCAAGGCTCACAATCATACACCGTGACCTC 1380
Query 253 AAAGCAAGTAACATTCTCTTAGATGCCGACATGAACCCCAAAATCGCAGATTTTGGCA-T 311
|||||||||||||||||| | ||||| || ||||| |||||| | || |||||||| | |
Sbjct 1381 AAAGCAAGTAACATTCTCCTGGATGCGGATATGAATCCCAAACTTGCTGATTTTGG-ACT 1439
Query 312 GGCGAGGAT-TTACAGAATTGATCAAACTCATGCCAACACAAATAGAATCGTTGGAACAT 370
||| ||||| || |||| || ||||| || | ||||||| ||||| ||||| || |
Sbjct 1440 GGCAAGGATCTT-TGGAATGGACCAAACCCAGGAAAACACAAGCAGAATAGTTGGTACCT 1498
Query 371 AT-GGTTATATGTCTCCAGAATATGCAATGCGTGGCCATTTCTCCATGAAATCTGATGTC 429
| ||||| ||| |||| ||||||||||| | |||||| ||||| |||||||||||||
Sbjct 1499 -TCGGTTACATGGCTCCTGAATATGCAATACATGGCCAGTTCTCGGTGAAATCTGATGTG 1557
Query 430 TATAGCTTTGGTGTAATGATTCTAGAGATCATAAGTGGCAA-AATGAATAGCAGCTTCTA 488
|||||||| || || || | || ||||| ||||| || || || ||| | |||||| ||
Sbjct 1558 TATAGCTTCGGAGTGTTGGTGCTTGAGATTATAAGCGGTAAGAA-GAACAACAGCTTTTA 1616
Query 489 CGACATTGATGATTCTCCTAGCAATTTGGTCACACATGCTTGGAAGCTTTGGAG-AACAG 547
||| | || | | | | | | ||||||||||||||||||| ||||||||| || |
Sbjct 1617 CGAGACAGACGGCGCACAT-G--ACTTGGTCACACATGCTTGGAGGCTTTGGAGTAA-TG 1672
Query 548 GGTCA-CAATTAGAACTCGTGGATCCGACAATA-GGT-GAGAGTTCCCCGAGTAACGAG- 603
| || | |||||| ||||||||||| | | || | || | || || | || |||
Sbjct 1673 GAACAGC-ATTAGACCTCGTGGATCC-A-ATTATTATAGATAATT-GCC-A--AAAGAGT 1725
Query 604 GCTA-TTATTAGATTCATCCATAT-CGCACTTTTATGTGTTCAAGAAGATCCTGCAGATC 661
| | | || ||| ||||||||| | ||||||||||||||||||||||||||||| |
Sbjct 1726 G-AAGTGGTTCGATGCATCCATATATG-TCTTTTATGTGTTCAAGAAGATCCTGCAGAGC 1783
Query 662 GACCAATGTTGCC-AGCAATCGTCGTGATGCTCACTAGTAATACAGACACTTTACCTGTG 720
| || || ||| | | || | || |||||||||| |||||||| | |||||||| |||
Sbjct 1784 GTCCGATCTTGTCGACCATTT-TCATGATGCTCACAAGTAATACTGTGACTTTACCAGTG 1842
Query 721 CCTC 724
||||
Sbjct 1843 CCTC 1846
> AT4G11500.1 | Symbols: | pseudogene, similar to putative receptor-like
serine-threonine protein kinase, blastp match of
59% identity and 6.5e-66 P-value to GP|18076583|emb|CAC84552.1||AJ306626
putative receptor-like serine-threonine protein
kinase {Solanum tuberosum} | chr4:6982597-6983619 FORWARD LENGTH=1023
Length=1023
Score = 254 bits (137), Expect = 1e-66
Identities = 182/203 (90%), Gaps = 5/203 (2%)
Strand=Plus/Plus
Query 526 GCTTGGAAGCTTTGGAGAACAGGGTCACAATTAGAACTCGTGGATCCGACAATAGGTGAG 585
|||||||||||||||||||||||||||| || ||||| |||||||||||||| || |||
Sbjct 808 GCTTGGAAGCTTTGGAGAACAGGGTCACCTTTTGAACTTGTGGATCCGACAATGGGAGAG 867
Query 586 AGTTCCCCGAGTAACGAGGCTATTATTAGATTCATCCATATCGCACTTTTATGTGTTCAA 645
||||| | ||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 868 AGTTCTCGGAGTAACGAGGCTATTATTAGATGCATCCATATCGCACTTTTATGCGTTCAA 927
Query 646 GAAGATCCTGCAGATCGACCAATGTTGCC---AGCAATCGTCGTGATGCTCACTAGTAAT 702
|||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||
Sbjct 928 GAAGATCCTGTAGATCGACCAATGTTGCCTGCAGCAATAGTCGTGATGCTCACTAGTAAC 987
Query 703 ACAGACACTTTACC-TGTGCCTC 724
| ||||| || ||| | ||||||
Sbjct 988 ATAGACAATT-ACCGTTTGCCTC 1009
Score = 237 bits (128), Expect = 1e-61
Identities = 146/155 (94%), Gaps = 0/155 (0%)
Strand=Plus/Plus
Query 372 TGGTTATATGTCTCCAGAATATGCAATGCGTGGCCATTTCTCCATGAAATCTGATGTCTA 431
||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||
Sbjct 574 TGGTTATATGTCTCCAGAATATGCAATGCGTAGTCATTTCTCCATGAAATCTGATGTCTA 633
Query 432 TAGCTTTGGTGTAATGATTCTAGAGATCATAAGTGGCAAAATGAATAGCAGCTTCTACGA 491
||||||||||||||||||||||||||| |||||||| |||| |||| ||||||||||| |
Sbjct 634 TAGCTTTGGTGTAATGATTCTAGAGATTATAAGTGGTAAAACGAATCGCAGCTTCTACTA 693
Query 492 CATTGATGATTCTCCTAGCAATTTGGTCACACATG 526
|||||||| ||||||||||||||||||||| ||||
Sbjct 694 CATTGATGGTTCTCCTAGCAATTTGGTCACTCATG 728
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 39885912718
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5