BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895332
Length=639
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11521.1 | Symbols: | Receptor-like protein kinase-related ... 955 0.0
AT4G11500.1 | Symbols: | pseudogene, similar to putative recep... 93.5 2e-18
> AT4G11521.1 | Symbols: | Receptor-like protein kinase-related
family protein | chr4:6985565-6986715 FORWARD LENGTH=1151
Length=1151
Score = 955 bits (517), Expect = 0.0
Identities = 599/639 (94%), Gaps = 4/639 (1%)
Strand=Plus/Plus
Query 1 GCTAACAACGGCTTCTACAGCTCCTCCATCGGCCAAAATCC-AGACCAAATGTTCATCAT 59
||| |||||||||||||||||||| |||||||||||||||| | ||||||||||||||||
Sbjct 217 GCTCACAACGGCTTCTACAGCTCCACCATCGGCCAAAATCCTA-ACCAAATGTTCATCAT 275
Query 60 TGGCATGTGTATCCCTGGAACTAAACCAGAGAGATGTTCAGATTGCATCAAAGGCTCATC 119
| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 276 TAGCATGTGCATCCCTGGAACTAAACCAGAGAGATGTTCAGATTGCATCAAAGGCTCAAC 335
Query 120 AGACGGCTTGTTAAGAAGCTGTCCTAACCAAACAGTTGGTTATGTATGGCCAGATTGTTG 179
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 336 AGACGGCTTGTTACGAAGCTGTCCTAACCAAACAGTTGGTTATGTATGGCCAGATTGTTG 395
Query 180 TATGGTACGTTATTCCAACATTTCATTCTCTGGATCATTCATTATGGAACCGTCTCAACC 239
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||
Sbjct 396 TATGGTACGTTATTCCAACATTTCCTTCTCTGGATCACTCATTATGGAACCGTCTCAACC 455
Query 240 TA-TGTCCGATCCCGCACCTATCGGTGTTGATTTGAAATTGTTTGATAGAATCTGGGACG 298
| |||| |||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct 456 -AGTGTCTGATCCCGCACCTATCGGTGTTGATTTGACATTGTTTGATAGAATATGGGACG 514
Query 299 ACTTAATGTCCCGTACGATAGCTGCAGCTTCGAGGACTCATGGATCATCATCATTTGGGC 358
| |||||||| ||||||||| || |||||||||||||||||||||||| |||||||||||
Sbjct 515 AGTTAATGTCTCGTACGATAACTACAGCTTCGAGGACTCATGGATCATTATCATTTGGGC 574
Query 359 ATAAATACTATACAGCTGAGGTTGCTTCATTGACAGCTTTCCAAACTATATATGCAATGG 418
|||| |||||| ||||||| ||||||||||||||| |||||||||||||||| | ||||
Sbjct 575 ATAAGTACTATGCAGCTGATGTTGCTTCATTGACAACTTTCCAAACTATATACACCATGG 634
Query 419 TGCAATGTACACCGGATGTTTCTTCAGGGGACTGTGAGTTTTGTCTGAACAAAACTGTTG 478
| ||||||||||||||||||||||||||||| |||||||||||| |||| | |||||||
Sbjct 635 TACAATGTACACCGGATGTTTCTTCAGGGGATTGTGAGTTTTGTTTGAAGAGAACTGTTC 694
Query 479 TTGATTATAAGAAATGTTGTCGCGGTCACATTGGCGGTGCTTTTGTAAGACCATTTTGCT 538
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 695 TTGATTACAAGAAATGTTGTCGCGGTCACATTGGCGGTGCTTTTGTAAGACCATTTTGTT 754
Query 539 TTATCCGGTGGGATTTGTATCCTTTTGCTGGAGCTTTTGAACATCGTACATTGCCATCGC 598
||||||||||||||||||||||||||||||||||||||||| || ||| ||||||||||
Sbjct 755 TTATCCGGTGGGATTTGTATCCTTTTGCTGGAGCTTTTGAAAATATTACGTTGCCATCGC 814
Query 599 CTCCACCACCGCTTTCTTTGACTCCTCCGGTAAGCAATT 637
|||||||||||||||||||||||||||| ||||||||||
Sbjct 815 CTCCACCACCGCTTTCTTTGACTCCTCCCGTAAGCAATT 853
> AT4G11500.1 | Symbols: | pseudogene, similar to putative receptor-like
serine-threonine protein kinase, blastp match of
59% identity and 6.5e-66 P-value to GP|18076583|emb|CAC84552.1||AJ306626
putative receptor-like serine-threonine protein
kinase {Solanum tuberosum} | chr4:6982597-6983619 FORWARD LENGTH=1023
Length=1023
Score = 93.5 bits (50), Expect = 2e-18
Identities = 65/72 (90%), Gaps = 2/72 (3%)
Strand=Plus/Plus
Query 144 TAACCAAACAGTTGGTTATG-TATGGCCAGATTGTTGTATGGTACGTTATTCCAACATTT 202
||||||||||| | ||| | ||||||||||||||||||||||||||||||||||||||
Sbjct 10 TAACCAAACAGAAGCTTA-GACATGGCCAGATTGTTGTATGGTACGTTATTCCAACATTT 68
Query 203 CATTCTCTGGAT 214
| ||||||||||
Sbjct 69 CTTTCTCTGGAT 80
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 30843766258
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5