BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895333

Length=180
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11530.1 | Symbols: CRK34 | cysteine-rich RLK (RECEPTOR-like...   231    1e-60
  AT4G23250.1 | Symbols: EMB1290, DUF26-21, RKC1, CRK17 | kinases...  71.3    3e-12


> AT4G11530.1 | Symbols: CRK34 | cysteine-rich RLK (RECEPTOR-like 
protein kinase) 34 | chr4:6987093-6989599 FORWARD LENGTH=2010
Length=2010

 Score =  231 bits (125),  Expect = 1e-60
 Identities = 162/180 (90%), Gaps = 1/180 (1%)
 Strand=Plus/Plus

Query  1    ACAAGTGTTGTTGATTATGAGTCGTGTTGTCGCGGTAAACAAGGTGGTGCGGTGATAAGA  60
            |||||||||| |||||||||||| ||||| || |||||||||||||||||||||||||||
Sbjct  643  ACAAGTGTTGGTGATTATGAGTCATGTTGCCGTGGTAAACAAGGTGGTGCGGTGATAAGA  702

Query  61   CCAAGTTGCTTTTTCCGGTGGGAATTGTATACTTATGCTGGAGCTTTTGAGAATATTACA  120
            |||||||||||| |||||||||| |||||| ||||||||||||||||||| ||| |||||
Sbjct  703  CCAAGTTGCTTTGTCCGGTGGGATTTGTATCCTTATGCTGGAGCTTTTGAAAATGTTACA  762

Query  121  TTGCTACCGTCTCCACCACAGTCTTTCACCTCAGCCACCGCAATCTTTGACTCCTCCTCC  180
            || | |||| ||||||| |||||||| |||||||||||||   ||||||| |||||||||
Sbjct  763  TTTCCACCGCCTCCACCGCAGTCTTT-ACCTCAGCCACCGGTTTCTTTGATTCCTCCTCC  821


> AT4G23250.1 | Symbols: EMB1290, DUF26-21, RKC1, CRK17 | kinases;protein 
kinases | chr4:12162004-12167026 REVERSE LENGTH=3108
Length=3108

 Score = 71.3 bits (38),  Expect = 3e-12
 Identities = 59/68 (87%), Gaps = 6/68 (9%)
 Strand=Plus/Plus

Query  61   CCAAGTTGCTTTTTCCGGTGGGAATTGTATACTTATGCT--GGAGCTTTTGAGAATATTA  118
            |||||||||||||||||||||||||||||||||| | ||  || |||||||| | |||||
Sbjct  730  CCAAGTTGCTTTTTCCGGTGGGAATTGTATACTT-T-CTTTGGTGCTTTTGATAGTATTA  787

Query  119  CATTGCTA  126
             || ||||
Sbjct  788  -AT-GCTA  793



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7897312107


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5