BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895371
Length=2127
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11720.1 | Symbols: HAP2, GCS1 | hapless 2 | chr4:7063255-70... 3271 0.0
> AT4G11720.1 | Symbols: HAP2, GCS1 | hapless 2 | chr4:7063255-7066878
FORWARD LENGTH=2248
Length=2248
Score = 3271 bits (1771), Expect = 0.0
Identities = 2015/2132 (95%), Gaps = 19/2132 (1%)
Strand=Plus/Plus
Query 1 ATGGTGAACCCGATTTTAATGGCTTGTGTAATCGCCGGAATTGTCGTCGGAGTATTTAAC 60
||||||||| ||||||||||||||||| || ||||||||||| |||||||| | || |||
Sbjct 37 ATGGTGAACGCGATTTTAATGGCTTGTATACTCGCCGGAATTTTCGTCGGAATGTTCAAC 96
Query 61 GAAGTCGACGGAATTCAGATTTTATCGAAATCAAAGCTGGAGAAGTGTGAGAAAACATCA 120
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 97 GAAGTCGACGGAATTCAGATTTTATCGAAATCAAAGCTCGAAAAGTGTGAGAAAACATCA 156
Query 121 GATTCTGGTAATCTCAATTGTTCTACTAAGATCGTCTTGAATCTCGCTGTTCCCAGTGGA 180
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 157 GATTCTGGTAATCTCAATTGTTCCACTAAGATCGTCTTGAATCTCGCTGTTCCCAGTGGA 216
Query 181 TCCAGTGGAGGAGAGGCTTCGATCGTAGCGGAGATCGTCGAGGTTGAAGATAATTCGAGT 240
||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||
Sbjct 217 TCCAGTGGAGGAGAGGCTTCGATTGTAGCGGAGATCGTGGAGGTTGAAGATAACTCGAGT 276
Query 241 AGTAATATGCAAACCGTACGGATTCCACCGGTTATTACAGTGAACAAATCCGCAGCATAT 300
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 277 AGTAATATGCAAACCGTACGGATTCCACCGGTTATTACAGTGAACAAATCTGCAGCATAT 336
Query 301 GCTCTTTATGATCTTACTTACATTAGGGATGTGCCTTATAAACCTCAAGAGTATCATGTT 360
||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 337 GCTCTCTATGATCTTACTTACATTAGGGATGTACCTTATAAACCTCAAGAGTATCATGTC 396
Query 361 ACGACTCGAAAGTGTGAACCCGATGCTGGACCGGATATTGTACAAATATGTGAGAGGTTG 420
||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||
Sbjct 397 ACGACTCGAAAGTGTGAACACGATGCTGGACCGGATATTGTACAAATTTGTGAGAGGTTG 456
Query 421 AGAGATGAGAAAGGG-AATGTTTTGGAGCAGACTCAGCCGATTTGTTGTCCATGTGGACC 479
||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct 457 AGAGATGAG-AAGGGTAATGTTTTAGAGCAGACTCAGCCGATTTGTTGTCCATGTGGACC 515
Query 480 GCAGA-GAAGAATGCCTTCATCTTGTGGAGATATTTTTGATAAGATGATAAAAGGCAAGG 538
||| | ||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||
Sbjct 516 GCA-ACGAAGAATGCCTTCTTCTTGTGGAGATATTTTTGATAAGATGATTAAAGGGAAGG 574
Query 539 CAAATACTGCGCATTGCCTTCGTTTTCCAGGTGACTGGTTCCATGTTTTCAGCATTGGAC 598
||||||| |||||||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 575 CAAATACCGCGCATTGCCTTCGTTTTCCAGGTGACTGGTTCCATGTTTTCGGGATTGGAC 634
Query 599 AACGGTCACTAGGATTTAGCGTGCGAGTTGAGTTGAAAACAGGAACTAGAGTTTCAGAAG 658
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 635 AACGGTCACTAGGATTTAGTGTGCGAGTTGAGTTGAAAACAGGAACTAGAGTTTCAGAAG 694
Query 659 TGATCATTGGTCCTGAAAATAGGACAGCTACTGCAAATGATAATTTTCTCAAGGTTAATC 718
||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct 695 TGATCATTGGTCCTGAAAATAGGACAGCTACTGCAAATGATAACTTTCTCAAAGTTAATC 754
Query 719 TCATAGGAGACTTTGGTGGTTATACAAGTATTCCTTCTTTCGAGGACTTCTATCTTGTAA 778
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 755 TCATAGGAGACTTTGGTGGTTACACAAGTATTCCTTCTTTCGAGGACTTCTATCTTGTAA 814
Query 779 TCCCAAGAGAGGCGGCTGCAGCGGGACAACCAGGGAGCTTAGGCGCAAATTACTCAATGT 838
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 815 TCCCAAGAGAGGCGGCTGAAGCGGGACAACCAGGGAGCTTAGGCGCAAATTACTCAATGT 874
Query 839 GGATGCTGCTTGAGAGAGTGAGATTTACATTGGATGGCTTAGAATGTAATAAAATCGGTG 898
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 875 GGATGCTGCTTGAGAGAGTGAGATTTACATTGGATGGCTTAGAATGTAATAAAATCGGTG 934
Query 899 TTGGTTATGAAGCTTTCAACACCCAACCAAATTTCTGCTCTTCACCATATTGGAGTTGCT 958
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 935 TTGGTTATGAAGCTTTCAACACCCAACCAAATTTCTGCTCTTCTCCATATTGGAGTTGCT 994
Query 959 TGCATAATCAACTATGGAACTTCCGCGAGGCAGATATTAACCGAATC-AGCCGACACCAA 1017
||||||||||||||||||||||||| ||| ||||||| ||| ||||| | ||||||||||
Sbjct 995 TGCATAATCAACTATGGAACTTCCGTGAGTCAGATATAAACAGAATCGA-CCGACACCAA 1053
Query 1018 CTTCCTTTATATGGACTGGAAGGAAGATTTGAGAGGATTAATCAACATCCAAACGCAGGG 1077
||||||||||||||||| |||||||||||||||||||| ||||||||||||||||| |||
Sbjct 1054 CTTCCTTTATATGGACTTGAAGGAAGATTTGAGAGGATCAATCAACATCCAAACGCGGGG 1113
Query 1078 CCTCACTCGTTCTCGATTGGAGTCACGGAAACACTCAACACAAATCTAATGATAGAACTA 1137
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1114 CCTCACTCGTTCTCAATTGGAGTCACGGAAACACTCAACACAAATCTAATGATAGAACTA 1173
Query 1138 AGAGCTGATGATATTGAATACGTTTTCCAGAGGAG-CCCTGGTAAAATCATAAACATCGC 1196
||||||||||||||||||||||||||||||||||| ||| ||||| ||||||||||||||
Sbjct 1174 AGAGCTGATGATATTGAATACGTTTTCCAGAGGAGTCCC-GGTAAGATCATAAACATCGC 1232
Query 1197 TATACCCACATTTGAGGCACTTACACAATTCGGAGTTGCTGCAGTCACAATCAAGAATAC 1256
||||| ||||| || ||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1233 GATACCGACATTCGAAGCACTTACACAATTCGGAGTTGCTGCAGTCATAATCAAGAATAC 1292
Query 1257 CGGTGAAGTAGAAGCATCTTATAGCTTAACGTTTGATTGCTCCAAAGGCGTGGCTTTTGT 1316
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1293 TGGTGAAGTAGAAGCGTCTTATAGCTTAACGTTTGATTGCTCCAAAGGCGTGGCTTTTGT 1352
Query 1317 TGAGGAGCAATTCTTCATTATAAAACCAAAAGCGGTTACTACTCGAG-CTTTTAAGCTAT 1375
|||||| ||||| |||||||||||||| ||||||||||||||||| | |||||||||| |
Sbjct 1353 TGAGGAACAATTTTTCATTATAAAACCGAAAGCGGTTACTACTCG-GTCTTTTAAGCTGT 1411
Query 1376 ACCCGACGAAAGATCAAGCTGCAAAGTATATATGCACAGCTATACTCAAGGATTCTCAGT 1435
|||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1412 ACCCGACGAAAGATCAGGCTGCAAAGTATATATGCACAGCTATACTCAAGGACTCTCAGT 1471
Query 1436 TCAGTGAAGTAGACAGAGCCGAGTGTCAATTTAGTACAACGGCTACCGTACTCGACAATG 1495
|||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1472 TCAGCGAAGTAGACCGAGCCGAGTGTCAATTTAGTACAACGGCTACCGTACTTGACAATG 1531
Query 1496 GAACTCAGGTTACTAATCCATTTCAAATTCCAGAAACTCATCCTAAAGGTTTCTTTGATT 1555
|||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 1532 GAACTCAGGTTACTAATCCATTTCAAATTCCAGAGACTCAACCTAAAGGTTTCTTTGATT 1591
Query 1556 CGATAAGGATACTAGGGACGAAAATCATCAATGGTTTAGTCGATTTCATCACCGGAGATA 1615
|||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1592 CGATCAGGATACTATGGACGAAAATCATCAATGGTTTAGTCGATTTCATCACCGGAGATA 1651
Query 1616 CTTGCAGAAACAAATGCTCGAGTTTCTTTGATTTCAGCTGCCACATTCAATACGTTTGTT 1675
|||||||||||||||||||||||||||| || ||||| |||||||||||||||||||| |
Sbjct 1652 CTTGCAGAAACAAATGCTCGAGTTTCTTCGACTTCAGTTGCCACATTCAATACGTTTGCT 1711
Query 1676 TAAGCTGGATGGTTATGTTCGGCCTTCTCCTCGCTCTTTTCCCAACCACATGTTTGCTTC 1735
||||||||||||||||||| || |||||||||||||| ||||||| || ||||||||||
Sbjct 1712 TAAGCTGGATGGTTATGTTTGGTCTTCTCCTCGCTCTCTTCCCAATTACTTGTTTGCTTC 1771
Query 1736 TTTGGCTCTTACACCAAAAGGGACTATTTGATCCATGCTACAACTGGTGGGAAGATCATT 1795
|||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 1772 TTTGGCTCTTGCACCAAAAGGGACTCTTTGATCCATGCTACGACTGGTGGGAAGATCATT 1831
Query 1796 TCGACTTAGACCATCATAGGAGATTATTACCCACCAGAGAAAACATCGCTAACCGCCATC 1855
|||| |||||||||||| |||||||||||||| |||||| | || | | |||||||||||
Sbjct 1832 TCGATTTAGACCATCATCGGAGATTATTACCCTCCAGAGCAGACGTTGTTAACCGCCATC 1891
Query 1856 ATCACCATCACAAGCATCATCATGGTGTCAAAACCCATAATCATCATCGTAGGACACACC 1915
|||||||||||||||||| |||| || || ||||||| ||||||||||||||||
Sbjct 1892 ATCACCATCACAAGCATCGTCAT-----CA---CC-ATAATCACCATCGTAGGACACACC 1942
Query 1916 AGAGACACAAACACCATCATGGGGAAAACCATGACGTTTTGCAGAAGATGATGCTTGACC 1975
||||||||||||| |||||||| || || | ||||| |||||||||||||||||||| |
Sbjct 1943 AGAGACACAAACATCATCATGGTCAAGACGACGACGTATTGCAGAAGATGATGCTTGAAC 2002
Query 1976 GTGACCACAGCGACGCTCACTACTACCACCAACTTCATCGAGTCCATAAAGATAGCAAGC 2035
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2003 GTGACCACAGCGACTCTCACTACTACCACCAACTTCATCGAGTCCATAAAGATAGCAAGC 2062
Query 2036 AGAAGCAGCGTAGGCGAGCCAAGCACGGGATTGTCTTGCCACGTGATGTGCACGTGGAAA 2095
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct 2063 AGAAGCAGCGTAGGCGAGCCAAGCACGGGATCGTCCTGCCACGTGATGTGCACGTGGAAA 2122
Query 2096 GACGGAGGAGACAAAGACTACGTGAGTGTTAA 2127
||| ||||| |||||||||||||||| |||||
Sbjct 2123 GACAGAGGAAACAAAGACTACGTGAGAGTTAA 2154
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105471345045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5