BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895373

Length=294
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G11760.1 | Symbols: LCR17 | low-molecular-weight cysteine-ri...   429    7e-120


> AT4G11760.1 | Symbols: LCR17 | low-molecular-weight cysteine-rich 
17 | chr4:7079316-7080445 FORWARD LENGTH=612
Length=612

 Score =  429 bits (232),  Expect = 7e-120
 Identities = 274/294 (93%), Gaps = 3/294 (1%)
 Strand=Plus/Plus

Query  1    ATGAAGAAACCCAGTCAACTATCGACCACCATTCTAACTATCTTCGTGATCCTTGCTATA  60
            |||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct  11   ATGAAGAAACCCAGTCAACTATCGGCCACCATTCTAACTATCTTTGTGATCCTTGCTATA  70

Query  61   GGGGTGATGGTGAAGGAAACACTGGGACAGGCACCGAGGACTTGTTTTGAAGCTCTAAAA  120
            ||||||||||||||||||||| ||||||| || ||||| |||||||||||||||||||||
Sbjct  71   GGGGTGATGGTGAAGGAAACATTGGGACAAGCGCCGAGTACTTGTTTTGAAGCTCTAAAA  130

Query  121  GATGCTTCTAAAGGTGCATCAACATGTGACTCGGAATTGTGTGCCTCTCTATGTAAGAAG  180
            ||||||||||| |||||||   ||||||||||||||||||||||||||||||||||||||
Sbjct  131  GATGCTTCTAAGGGTGCAT---CATGTGACTCGGAATTGTGTGCCTCTCTATGTAAGAAG  187

Query  181  AAATCTGCCGACGGTGTTGGTACTTGCAGAACAAAGACGACACAACCCAGTAAAGGACAA  240
            ||||| | || ||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct  188  AAATCCGGCGGCGGTGTTGGTACTTGTAGAACAAAGACGACACAACCCAGTAAAGGACAA  247

Query  241  CCAGAATGCCACTGCAGATTTTGGTGTCGATCAGATGGAAGTCCGTACAAGTAG  294
            ||||||||||||||||| |||||||||  |||||||||||  || |||||||||
Sbjct  248  CCAGAATGCCACTGCAGGTTTTGGTGTAAATCAGATGGAACCCCCTACAAGTAG  301



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 13572292230


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5