BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895385
Length=570
Score E
Sequences producing significant alignments: (Bits) Value
AT1G28380.1 | Symbols: NSL1 | MAC/Perforin domain-containing pr... 857 0.0
> AT1G28380.1 | Symbols: NSL1 | MAC/Perforin domain-containing
protein | chr1:9963593-9966320 FORWARD LENGTH=2202
Length=2202
Score = 857 bits (464), Expect = 0.0
Identities = 526/556 (95%), Gaps = 3/556 (1%)
Strand=Plus/Plus
Query 1 ATGGCCTATAACAATTTCACCCGCCTCGATGCTCAATCCGCCGCCGAGAAAGCCGTCTCA 60
||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 104 ATGGCCTTTAACAATTTCACCCGCCTCGATGCTCACTCCGCCGCCGAGAAAGCCGTCTCT 163
Query 61 GTGATCGAATTAGGTTACGATCTCTGCTCTGATGTTCGTTTCTCCGCTTGTAAAACTACA 120
|| |||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 164 GTAATCGGATTAGGTTACGATCTCTGCTCCGATGTTCGTTTCTCCGCTTGTAAAACCACA 223
Query 121 CTAGACGGTTCCAGGTTAGTCGAAATCGACCCGACCCGGAACCGTGACTTAGTCTTCCCC 180
| |||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||
Sbjct 224 CCCGACGGTTCCAGGTTAGTCGAAATCGACCCGACTCGGAACCGTGACTTAATCTTCCCC 283
Query 181 GGTGGGATCGTCGTTAACAACGTCTCGAGCTCTATTAAGTGCGATAAAGTTGAACGTACT 240
||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||
Sbjct 284 GGTGGTATCGTCGTTAACAACGTCTCGAGCTCGATTAAGTGCGATAAAGGCGAACGTACT 343
Query 241 CGATTACGCTCCGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 344 CGATTACGCTCCGATATACTCTCTTTTAATCAGATGTCGGAGAAGTTTAATCAAGATATG 403
Query 301 TGTCTCTCCGGGAAGATTCCGCCGGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGT 360
||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct 404 TGTCTCTCCGGGAAGATTCCGTCAGGGATGTTTAATAATATGTTTGCGTTTAGTAAATGT 463
Query 361 TGGCCTAAAGATGCGAGCTCTGTGAAGAATTTAGCTTATGATGGTTGGTTCATTAGCTTG 420
||||| ||||||||||||||||| |||| ||||||||||||||||||||| ||||| |||
Sbjct 464 TGGCCAAAAGATGCGAGCTCTGTTAAGACTTTAGCTTATGATGGTTGGTTTATTAGTTTG 523
Query 421 TATATACGTGTTGAGATTGTTAGGAAGCAATTGACTCTACGTGATGAAGTGAAACGTGAG 480
|||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||
Sbjct 524 TATA---GTGTAGAGATTGTTAGGAAGCAGTTGACACTACGTGATGAAGTGAAACGTGAG 580
Query 481 GTTCCTTCTTCTTGGGACTCTGCTTCACTTGCTGGGTTTATTGAGAAATATGGTACTCAT 540
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 581 GTTCCTTCTTCTTGGGACTCTGCTGCACTTGCTGGGTTTATTGAGAAATATGGTACTCAT 640
Query 541 GTAGTTGTTGGAGTGA 556
|| |||||||||||||
Sbjct 641 GTTGTTGTTGGAGTGA 656
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27377610115
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5