BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895387
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11890.3 | Symbols: | Protein kinase superfamily protein | ... 1459 0.0
> AT4G11890.3 | Symbols: | Protein kinase superfamily protein
| chr4:7148246-7149921 FORWARD LENGTH=1237
Length=1237
Score = 1459 bits (790), Expect = 0.0
Identities = 978/1070 (91%), Gaps = 7/1070 (1%)
Strand=Plus/Plus
Query 1 ATGGCCCTTACTTCGCTTCTCGATACCGTTTTCCGACGAAGAAAGAAGAAGAAGTCTACT 60
|||||| ||||||||||||||||||||||||||||||| || | |||||||||||||||
Sbjct 24 ATGGCCGTTACTTCGCTTCTCGATACCGTTTTCCGACGTAG--A-AAGAAGAAGTCTACT 80
Query 61 GAGTTTGA-AAGCAATTCTGCAGTTTTCGAGTTCGACTTCGACACTATTAAAGCTGCAAC 119
|||||| | |||| || | ||||||||||| |||||||| ||||| ||||||||||||||
Sbjct 81 GAGTTT-ATAAGCTATACAGCAGTTTTCGAATTCGACTTGGACACCATTAAAGCTGCAAC 139
Query 120 AAATGAGTTCTCACAACTGGTTGGTCATGGCGGATTTGGTTCTGTTTACAAGGGTAGGCT 179
|||||| |||||| |||||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 140 AAATGATTTCTCAGAACTGGTTGGTCGTGGCGGATTTGGTTTTGTTTACAAGGGTAGGCT 199
Query 180 TCAAAGTGGACAAGAAATAGCAGTCAAGATTTTGTCTAAAAGTTCAATAAGAACTGAGAC 239
||||| |||||||||||||||||||||||||||||||| ||||||||| ||||||||||
Sbjct 200 TCAAAATGGACAAGAAATAGCAGTCAAGATTTTGTCTACAAGTTCAATTAGAACTGAGAG 259
Query 240 ACAGTTTCATAATGAACTTAATATTTTGTCAAAGCTTAGGCACAAGAATCTGATCAGTCT 299
|||||||||||| ||||||| ||||||||| ||||||| |||||||||||||||| |||
Sbjct 260 ACAGTTTCATAACGAACTTATTATTTTGTCTAAGCTTAAACACAAGAATCTGATCAATCT 319
Query 300 TCTTGGTTTCTGCACTAAACGAGACCAACATTGTCTTGTTTATGAGTTCATGCCCAACTC 359
||||||||||||||||||||||||||||||| |||||||||| ||||||||||| |||||
Sbjct 320 TCTTGGTTTCTGCACTAAACGAGACCAACATGGTCTTGTTTACGAGTTCATGCCTAACTC 379
Query 360 AAGCCTCGATTGCTTTCTACTCGATCCACATAGAGCTTCTCAGCTAAGTTGGGAGATATG 419
|||||||||||| ||| ||||||| ||||| |||||| ||||||||| ||||||||| ||
Sbjct 380 AAGCCTCGATTGTTTTATACTCGACCCACACAGAGCTGCTCAGCTAAATTGGGAGATGTG 439
Query 420 TCGAAACATTTTTGATGGCATAGCTCGAGGGTTACGTTACCTTCATGAAGAATCCGGGTT 479
||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 440 CCGAAACATTATTGATGGCATAGCTCGAGGGCTACGTTACCTTCATGAAGAATCCGGGTT 499
Query 480 ATGGCTCGTTCACCGCGACATTAAACCTCGAAACATTCTATTGGATTCAGATTTGAAACC 539
|||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 500 ATGGGTCGTTCACCGCGACATTAAACCTGGAAACATTCTATTGGATTCAGATTTGAAACC 559
Query 540 GAAAATCGTGGGGTTTGAATTGGCGAGGATGATGCAACAATGTGAAAACGAAGCTGAGTC 599
|||||| ||||| |||||||||||||||| |||||||||| ||||||||| |||||| |
Sbjct 560 GAAAATAGTGGGATTTGAATTGGCGAGGACGATGCAACAAGGTGAAAACGCAGCTGAAAC 619
Query 600 GACTGTAATTGTCGGTACCATAGGGTATTTAGATCCAGAGTACCTGCGAAGCGGGCGTGT 659
|||| ||||||||||||| |||||||||||||||| |||||| | |||||||| |||||
Sbjct 620 AACTGAAATTGTCGGTACCGTAGGGTATTTAGATCCGGAGTACATACGAAGCGGACGTGT 679
Query 660 TTCTGTCAAATCTGATGTTTATGCCTTTGGAGTTACAATCTTGACGATCATTACCAGAAG 719
||| ||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 680 TTCCGTCAAATCTGACGTTTATGCCTTTGGAGTTACAATCTTGACGATCATTAGCAGAAG 739
Query 720 GAAGGCTTGGAGTGTTGACGGAGACTCTCTAATCGAATATGTTATGAGATGCTGGAACAG 779
||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||
Sbjct 740 GAAGGCTTGGAGTGTGGACGGAGACTCTCTAATCAAATATGTTAGGAGATGCTGGAACAG 799
Query 780 AGGAGAAGCCATAGATGTGATCCATGAAGTGATGAGGGAAGAAGAAAGAGAAGATTCGAT 839
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 800 AGGAGAAGCCATAGATGTGATCCATGAAGTGATGAGGGAAGAAGAAAGAGAATATTCGAT 859
Query 840 AAGCGAAATCTTGAGATACATTCACATTGCTTTGTTATGTATCGATGAAAATGCAGAGAC 899
|||||||||||||||||||||||||||||||||| ||||| | ||||| ||||| ||||
Sbjct 860 AAGCGAAATCTTGAGATACATTCACATTGCTTTGCTATGTGTGGATGAGAATGCTGAGAG 919
Query 900 AAGGCCGAGTATTGATAGAGTTCTTCACTGGTTTAGTTGTATCTCTACTCCTTTGCCGGA 959
|||||||| |||||||| |||||| || |||||||||||| ||||||||||||| || ||
Sbjct 920 AAGGCCGAATATTGATAAAGTTCTGCATTGGTTTAGTTGTTTCTCTACTCCTTTACCTGA 979
Query 960 ACCAACCAGT-GGTAATCGATTTCTTGGAAAGGAAGAAACCAATTGGCCCTGGTCACTGT 1018
||||| | | |||||| ||||||||| | |||||||||| |||||||||||||| | |
Sbjct 980 TCCAAC-ATTTGGTAATAGATTTCTTGTAGAGGAAGAAACAAATTGGCCCTGGTCGCCAT 1038
Query 1019 CTCTATCTCCCGGACATAGCTCTGTTACGTCACCCATATCTTCACGTTAA 1068
|| ||||||| || || |||||||| ||||||||||||||||||||||||
Sbjct 1039 CTTTATCTCCTGGTCACAGCTCTGTCACGTCACCCATATCTTCACGTTAA 1088
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5