BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895388
Length=2421
Score E
Sequences producing significant alignments: (Bits) Value
AT4G11900.1 | Symbols: | S-locus lectin protein kinase family ... 2279 0.0
> AT4G11900.1 | Symbols: | S-locus lectin protein kinase family
protein | chr4:7150241-7153571 REVERSE LENGTH=2579
Length=2579
Score = 2279 bits (1234), Expect = 0.0
Identities = 1886/2184 (86%), Gaps = 112/2184 (5%)
Strand=Plus/Plus
Query 297 AACATTTTGGTCGACCGGTGTTAATTCTAGTAGGAGCACA-GATGTTCAAGCTGTTCTGC 355
|||| ||||||||||||||||||| ||||||| ||||| | ||||||||||||||||||
Sbjct 449 AACAGTTTGGTCGACCGGTGTTAACTCTAGTATGAGCA-AGGATGTTCAAGCTGTTCTGT 507
Query 356 TTGATAATGGTAATCTAGTATTGAAAGATGGGCCAAATTCTTCTGCAGCTGTGTTGTGGC 415
|||||| ||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct 508 TTGATAGTGGTAATCTAGTATTGAGAGATGGGCCTAATTCTTCTGCAGCTGTGTTGTGGC 567
Query 416 AGAGTTTTGATCATCCCTCGGATACTTGGCTTCCAGGAGCTAAAATCAGGTTTAACAACA 475
|||||||||||||||||||||||||||||||||| | | | || | | || |
Sbjct 568 AGAGTTTTGATCATCCCTCGGATACTTGGCTTCC-TG-G-------C-GG--T-A-AA-A 612
Query 476 TCAAACTGGGAAGCCAACGTCTCACGTCTT-GGAAAGGCTTGACAAATCCATCACCGGGT 534
||| | | |||||||||| | |||| |||| ||| | |||||| | ||||||||||||||
Sbjct 613 TCAGATTAGGAAGCCAACTTTTCACTTCTTGGGAGA-GCTTGATAGATCCATCACCGGGT 671
Query 535 CGATACTCTCTCGAGGTTGACCCTAATACAACACACTCCCTCATAACGGTTTGGAATGGA 594
||||||||||||||| |||||||||| || |||||| ||| | |||||||||||| ||
Sbjct 672 CGATACTCTCTCGAGTTTGACCCTAA-AC--TACACTCACTCGTCACGGTTTGGAATAGA 728
Query 595 TCTAAGTCATATTGGTCCAGCGGGCCA-TG--GGA-T-G-ATC-AA-TTT--AGAG-TCT 643
|| ||||||||||||||||| |||||| || || | | || || ||| || | | |
Sbjct 729 TCAAAGTCATATTGGTCCAGTGGGCCATTGTATGATTGGCTTCAAAGTTTCAAGGGATTT 788
Query 644 CCA-TTTTG---GCTATTTCCTTGAGTTTCAAATTGAACCTGGATGAGTCTTACATCACC 699
||| ||| | || | |||||||||| |||||| ||||||||||||||||||||
Sbjct 789 CCAGAATTGCAAGGTACTAAGTTGAGTTTCACATTGAATATGGATGAGTCTTACATCACC 848
Query 700 TATTCAGCAGAAAACTATAGCACATATCGTTTGGTCATGGATGTTTCCGGGCGGTTCATG 759
| ||||| ||| | | |||| ||||||||||||||||| |||||| |||| |||||||
Sbjct 849 TTTTCAGTAGATCCCCAGAGCAGATATCGTTTGGTCATGGGTGTTTCGGGGCAGTTCATG 908
Query 760 CTGCACGTTTTCTTA-GTTGACATCCAGTTGTGGGGTGCGATATGGTCTCAACCAAGA-G 817
||||| | ||| | |||||| | |||| |||| ||| ||||| ||||||||| ||
Sbjct 909 CTGCAAG-TTTGGCACGTTGACTTACAGTCGTGGCGTGTGATATTGTCTCAACC-TGATA 966
Query 818 ATACATGTG-CGGTTTATAATTCTTGTGGATCGTTTGGGATTTGCGATGAACAAGCG-GA 875
||| ||||| | |||||||| ||||||||| |||||||||||| ||||| || || ||
Sbjct 967 ATAGATGTGAC-GTTTATAACAGTTGTGGATCATTTGGGATTTGCAATGAA-AACCGAGA 1024
Query 876 ---TACACCC-TGTAGATGTGTTCCTGGTTTCAAACAAGCA-TTT-----GG--C-GAGG 922
| | ||| ||||||||||||||||||||||||| || | ||| || | || |
Sbjct 1025 GCCT-CCCCCATGTAGATGTGTTCCTGGTTTCAAACGAGAATTTTCCCAAGGATCTGATG 1083
Query 923 ACTCGAATGATTACTCTGGTGGTTGTAAAAGGGAAATAAATCTTCAATGTGACAAGGGAA 982
|||||||||||||||||||||||||||||||||||| | | ||||| ||| | ||| |||
Sbjct 1084 ACTCGAATGATTACTCTGGTGGTTGTAAAAGGGAAACATACCTTCATTGTTATAAGCGAA 1143
Query 983 ATGACGAGTTTTTTCCTATTGAAAACATGAAATTAGCCACTGATCCAACAACAACATTGG 1042
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||| ||
Sbjct 1144 ATGACGAGTTTCTTCCTATTGAAAACATGAAATTAGCCACTGATCCAACAACAGCATCGG 1203
Query 1043 TCTTGAC-GGCAAGTCTTGTTACGAGC-TGTGCCTCAGC-TTGCCTAGCTAATTGTTCTT 1099
||||||| | | ||| ||| || | ||||||||| | |||| ||||| |||||||||
Sbjct 1204 TCTTGACATCCGGGACTT-TTAGGA-CGTGTGCCTCA-CGTTGCGTAGCTGATTGTTCTT 1260
Query 1100 GCCAGGCCTACGCATATGATGGAAACAAGTGTTTGATGTGGACAAGAGATGCTTTCAATC 1159
|||| || |||||| |||||||||||||||||||| ||||||||| ||||||||||||||
Sbjct 1261 GCCAAGCGTACGCAAATGATGGAAACAAGTGTTTGGTGTGGACAAAAGATGCTTTCAATC 1320
Query 1160 TGCAACAACTTGATGCAAATAACACAGAGGGACACA-tttttttCCTTAGACTTG----- 1213
|||||||||| ||||||||| | ||||||||| || ||| ||||||||||
Sbjct 1321 TGCAACAACTCGATGCAAAT-----A-AGGGACACACATTCTTT-CTTAGACTTGCATCT 1373
Query 1214 -C---C-GCT----T-CAAACAAGGGAGAAACAG-AGAGTTCTAAAGTCAGAAGAATTGT 1262
| | || | ||||||| || |||||| | | |||||||| || ||| |||||
Sbjct 1374 TCAAACATCTCAACTGCAAACAACCGAAAAACAGAACA-TTCTAAAGGCAAAAGCATTGT 1432
Query 1263 GTTACCCGC-TGTACTCTCATCACTAATAGCAGCCGCTGCGTTTTTCGTTGGTTTGTATT 1321
|||| || | |||||| ||||||| ||||| | ||||| | |||||||||||||||||
Sbjct 1433 GTTA-CCACTTGTACTAGCATCACTTGTAGCAACTGCTGCATGTTTCGTTGGTTTGTATT 1491
Query 1322 GTTATATTTC-TCaaagaggaagaag-aaaaagaacaaaaagagacaaaaaacagagcag 1379
||| ||||| || |||| |||||| |||||||| | |||||||| ||||||| |||||
Sbjct 1492 GTTGCATTTCTTC-AAGAATAAGAAGAAAAAAGAA-ACAAAGAGACGAAAAACATAGCAG 1549
Query 1380 agagCTATTAGAAGGTGGCCTAATTGATGATGATGGAGAAAATATGTGTTACCTAAATCT 1439
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1550 AGAGCTATTAGAAGGTGGCCTAATTGATGATGCTGGAGAAAATATGTGTTACCTAAATCT 1609
Query 1440 GCATGACATTATGGCTGCAACAAATTCTTTCTCTGAGG-AAAATAAGCTAGGCGAAGGCG 1498
|||||||| |||| ||||||||||||||||||| ||| |||| ||| |||| ||||| |
Sbjct 1610 ACATGACATAATGGTTGCAACAAATTCTTTCTCT-AGGAAAAAAAAGTTAGGAGAAGGTG 1668
Query 1499 GTTTTGGTCCAGTCTACAAGGGAATGCTACTGAATGGGATGGATGTGGCCATCAAAAGGC 1558
|||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||
Sbjct 1669 GTTTTGGTCCAGTCTACAAGGGAAAGCTACCAAATGGGATGGAAGTGGCAATCAAAAGGC 1728
Query 1559 TTTCaaaaaaaTCAAGTCAAGGTCTGACAGAGTTCAAGAATGAAGTCGTTCTGATCATAA 1618
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 1729 TTTCAAAAAAATCAAGTCAAGGTCTGACAGAGTTCAAGAATGAAGTTGTTCTGATCATAA 1788
Query 1619 AGCTTCAACATAGGAACTTGGTGAGACTTTTAGGATATTGTGTTGAGGGCGACGAGAAAC 1678
|||||||||| | |||||||||||| |||||||| ||||||||||| ||||| ||||| |
Sbjct 1789 AGCTTCAACACAAGAACTTGGTGAGGCTTTTAGGGTATTGTGTTGAAGGCGATGAGAAGC 1848
Query 1679 TTCTAATTTACGAGTACATGTCGAATAAGAGCCTTGATGTTTTACTCTTTGATTCTTTAA 1738
| |||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 1849 TCCTAATTTATGAGTACATGTCGAATAAGAGCCTTGATGGTTTACTCTTTGATTCTTTAA 1908
Query 1739 AGTCTAGGGAATTGGATTGGGAGACGCGTATGAAAATAGTAAATGGGACGACAAGAGGAC 1798
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1909 AGTCTAGGGAATTGGATTGGGAGACACGTATGAAAATAGTAAATGGGACGACAAGAGGAC 1968
Query 1799 TTCAATATCTGCATGAGTACTCACGTCTCAGGATCATTCACCGAGATCTTAAGGCAAGCA 1858
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1969 TTCAATATCTGCATGAGTACTCACGTCTCAGGATCATTCACCGAGATCTTAAGGCAAGCA 2028
Query 1859 ATATTCTTCTCGACGATGAGATGAATCCTAAGATCTCAGATTTTGGAACCGCCAGGATCT 1918
||||||| || ||||||||||||||||||||||||||||||||||||||||| ||||| |
Sbjct 2029 ATATTCTACTTGACGATGAGATGAATCCTAAGATCTCAGATTTTGGAACCGCAAGGATTT 2088
Query 1919 TTGGTTGCAAGCAAATCGATGATAGCACCCAAAGAATCGTCGGAACTTGTAACGGCTATA 1978
||||||||||||||||||||||||||||||||||||||||||| || | | ||||||||
Sbjct 2089 TTGGTTGCAAGCAAATCGATGATAGCACCCAAAGAATCGTCGGGACAT-T--CGGCTATA 2145
Query 1979 TGTCACCGGAATATGCATTAGGCGG-GTTGATTTCAGAGAAATCGGATATATATAGCTTT 2037
|||||||||||||||||||||| || || |||||||||||||||||||||||| ||||||
Sbjct 2146 TGTCACCGGAATATGCATTAGGTGGAGT-GATTTCAGAGAAATCGGATATATACAGCTTT 2204
Query 2038 GGAGTGTTGTTATTGGAGATCATATCAGGCAAAAAGGCGACAAGGTTTGTTCACAACGAC 2097
|||||||||||||||||||||||||| || ||||||||||||||||||||||| ||||||
Sbjct 2205 GGAGTGTTGTTATTGGAGATCATATCGGGTAAAAAGGCGACAAGGTTTGTTCATAACGAC 2264
Query 2098 CAAAAACACAGCCTTATTGCTTATGCATGGGAGTCTTGGTGCGAAACACAAGGTGTAAGC 2157
||||||||||||||||||||||||| |||||| |||||||| |||||| |||||||||||
Sbjct 2265 CAAAAACACAGCCTTATTGCTTATGAATGGGAATCTTGGTGTGAAACAAAAGGTGTAAGC 2324
Query 2158 ATCATAGATGAAGCACTGCGTGGCTCCTATCCCGTAAAAGAAGTGATTCGGTGTGTTCAC 2217
|| ||||||||| || || || | || ||| | || |||||| ||| ||||| ||||
Sbjct 2325 ATTATAGATGAACCAATGTGTTGTTCGTATTCTTTAGAAGAAGCGATGCGGTGCATTCAT 2384
Query 2218 ATCGCACTTCTTTGTGTTCAAGATCATCCTAAAGATAGACCCACGATTTCGCAAATCATT 2277
||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| ||
Sbjct 2385 ATCGCACTTCTTTGTGTTCAAGATCATCCTAAAGATAGACCCATGATTTCACAAATCGTT 2444
Query 2278 TATATGTTGAGCAACGATAACACTCTTCCGATTCCGAAACAACCAACTTTCTCTAACGTG 2337
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2445 TATATGTTGAGCAACGATAACACTCTTCCGATTCCGAAACAACCAACTTTCTCAAACGTG 2504
Query 2338 TTGAACGGGGATCAACAGTTACTGTCGTCTGACTACGTGTTCTCCATAAACGAAGCAACG 2397
|||||||||||||||||| || | ||||||| |||||||||||||||||||||
Sbjct 2505 TTGAACGGGGATCAACAGCTA--G-------ACTACGTATTCTCCATAAACGAAGCAACG 2555
Query 2398 CAAACAGAACTGGAAGCACGATGA 2421
||||||||||||||||| ||||||
Sbjct 2556 CAAACAGAACTGGAAGCGCGATGA 2579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 120230305275
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5