BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895403

Length=339
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G24930.1 | Symbols:  | thylakoid lumenal 17.9 kDa protein, c...   255    1e-67


> AT4G24930.1 | Symbols:  | thylakoid lumenal 17.9 kDa protein, 
chloroplast | chr4:12821223-12823742 REVERSE LENGTH=1092
Length=1092

 Score =  255 bits (138),  Expect = 1e-67
 Identities = 238/282 (84%), Gaps = 24/282 (9%)
 Strand=Plus/Plus

Query  79   tcttcttcttctccttcaatctctctcttACCAAAACTAATCTCGTTTGCTAGTGCTCTA  138
            |||||| |||||||| |||||||||| ||||||||||||||||| ||||||  |||| | 
Sbjct  241  TCTTCTACTTCTCCTCCAATCTCTCTTTTACCAAAACTAATCTCTTTTGCTCTTGCTATC  300

Query  139  TCTCTTACATCCTCTTCCCCTGCCTTAGCCATTCCTTCTTTCTCCTCTTCTCAGCCACTC  198
            ||||| || |||| ||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct  301  TCTCTAACTTCCTTTTCCCCTGCCTTAGCCATTCCTTCTCTCTCCTCTTCTCAGCCACTC  360

Query  199  ACCACTCCTTTCAG----T--A----C--CCA-A----TC--C--AA---CAAAATTAGA  234
            |||||||||||||     |  |    |  ||| |    ||  |  ||   ||||||||| 
Sbjct  361  ACCACTCCTTTCACCCAATCCAAGTTCGTCCAGACCGGTCTTCTCAATGGCAAAATTAGG  420

Query  235  CCTTGCCCTTCCACGAACCCAGGTTGTGTATCGACGAATCCGACCTCATCTTCCTTCTCA  294
            ||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||| 
Sbjct  421  CCTTGCCCTTCCACGAACCCAGGATGTGTATCGACGAATCCAACCTCATCTTCCTTCTCT  480

Query  295  TTTCCATTGACGATCCGTGAAACCGATGCACAGGATCCCATT  336
            ||||||||||||||||  ||||||||| ||||||||||||||
Sbjct  481  TTTCCATTGACGATCCCAGAAACCGATACACAGGATCCCATT  522



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15834340935


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5