BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895406
Length=2562
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12020.2 | Symbols: WRKY19, ATWRKY19, MAPKKK11, MEKK4 | prot... 3223 0.0
> AT4G12020.2 | Symbols: WRKY19, ATWRKY19, MAPKKK11, MEKK4 | protein
kinase family protein | chr4:7201656-7209648 FORWARD LENGTH=5867
Length=5867
Score = 3223 bits (1745), Expect = 0.0
Identities = 2186/2398 (91%), Gaps = 34/2398 (1%)
Strand=Plus/Plus
Query 67 TTTT-CTGCCTCTGAAGATTATGATGTTGTAATCAGATACAGAAGAGGGGACCA-AATCG 124
|||| || ||||| ||||||||||||| |||||||||||| |||||| || | || |
Sbjct 1984 TTTTCCT-CCTCTAAAGATTATGATGTCGTAATCAGATACGGAAGAGCAGA-TATAAGCA 2041
Query 125 ACGATGATTTCATTAGCCATCTTCGTGCTGCCCTTTGCCGGAGAGGGATTTCTGTCTAT- 183
| || |||||||||||||||||||||||| |||| ||||||||||||||||||||||||
Sbjct 2042 ATGAGGATTTCATTAGCCATCTTCGTGCTTCCCTCTGCCGGAGAGGGATTTCTGTCTATG 2101
Query 184 AACGAATTTGATGAAGTGGATGCAGTTCCAAAATGTAGAGTTTTTATCATATTGTTAACA 243
|| ||||| |||||||||||||| ||||||||||||| ||||| || ||| | ||||||
Sbjct 2102 AA-AAATTTAATGAAGTGGATGCACTTCCAAAATGTAGGGTTTTGATTATAGTATTAACA 2160
Query 244 AGCACATATGTCCCGTCAAACCTCTTAAACATTCTTGAACACCAACAAACAGAGTATCAA 303
|||||||||||||| || ||||||||||||||||||||||||||||| |||||| ||| |
Sbjct 2161 AGCACATATGTCCCTTCGAACCTCTTAAACATTCTTGAACACCAACATACAGAGGATCGA 2220
Query 304 GCGGTTTATCCAATCTTT-TACAGACTATCACCATACGATTTAATCAGTAACAGCAAGAA 362
| |||||||||||| ||| ||||||||||||||||| ||||| || |||||||||||||
Sbjct 2221 GTGGTTTATCCAAT-TTTCTACAGACTATCACCATATGATTTTGTCTGTAACAGCAAGAA 2279
Query 363 TTATGAAAGATATTT-TCTCCAAAACGAACCAGAAAGGTGGCAGGCTGCTTTGAAGGAAA 421
|||||| |||| ||| ||||||| | || ||| ||| ||||| ||||||||||||||||
Sbjct 2280 TTATGAGAGAT-TTTATCTCCAAGATGAGCCAAAAAAATGGCAAGCTGCTTTGAAGGAAA 2338
Query 422 TATCTCAGATGCCTGGATACACGTTGACAGATAGGTCCGAATCTGAACTTATAGATGAGA 481
|| ||||||||||||| ||||| |||||||||| ||| ||||||||||||||||||||||
Sbjct 2339 TAACTCAGATGCCTGGCTACACATTGACAGATAAGTCTGAATCTGAACTTATAGATGAGA 2398
Query 482 TTGTAAGAGATGCTTTGAAGGTGCTATGTTCTGGTGATAAGGTGAACATGATTGGGATGG 541
|||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2399 TTGTAAGAGATGCTTTAAAGGTGCTATGTTCTGCTGATAAGGTGAACATGATTGGGATGG 2458
Query 542 ATATACAAGTAGAGGAGATTTTGTCACTGCTATGCATTGAGTCCCTAGATGTTCGCAGCA 601
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2459 ATATGCAAGTAGAGGAGATTTTGTCACTGCTATGCATTGAGTCCCTTGATGTTCGCAGCA 2518
Query 602 TAGGTATATGGGGTACGGTTGGTATAGGAAAAACAACCATTGCTGAAGAGATCTTTCGCA 661
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 2519 TTGGTATATGGGGTACAGTTGGTATAGGAAAAACAACCATTGCTGAAGAGATCTTTCGCA 2578
Query 662 GAATCTCTGTCCAATATGAGACTTGTGTCTTCCTTAAAGACCTCCACAAAGAAGTTGAAG 721
||||||||||||||||||||| |||||| ||||||| |||||||||||||||||||| |
Sbjct 2579 AAATCTCTGTCCAATATGAGACCTGTGTCGTCCTTAAGGACCTCCACAAAGAAGTTGAGG 2638
Query 722 TAAAAGGTCACGAGGCTGTGAGAGAGGATTTTTTGTCTAAAGTCTTAGAGGTAGAACCTC 781
||||||||||||| |||||||||||| ||||| ||||| |||| ||||||||||||||||
Sbjct 2639 TAAAAGGTCACGATGCTGTGAGAGAGAATTTTCTGTCTGAAGTTTTAGAGGTAGAACCTC 2698
Query 782 ATGTTATTCGGATTTCCGACATTAAAACTAGTTTCTTGAAG-AGTCGGCTTCAGCGTAAA 840
||||||| ||||| || ||||||||||| || |||||| || ||||||||||||||||||
Sbjct 2699 ATGTTATCCGGATATCTGACATTAAAACAAGCTTCTTG-AGAAGTCGGCTTCAGCGTAAA 2757
Query 841 AGGGTCCTTGTCATTCTGGACGATGTGAATGATTATAGAGATGTTGGCACCTTTTTGGGG 900
||| ||||||| ||||| ||||||||||||||||| |||||||||| |||||||||||||
Sbjct 2758 AGGATCCTTGTTATTCTTGACGATGTGAATGATTACAGAGATGTTGACACCTTTTTGGGG 2817
Query 901 AAGCTTAACTATTTTGGTCCAGGAAGCAGAATAATCATGACCTCAAGAAATAGACGTGTT 960
| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2818 ACGCTTAACTATTTTGGTCCAGGAAGCAGAATAATCATGACCTCTAGAAATAGACGTGTT 2877
Query 961 TTTGTACTATGTAAAATCGATCATGTCTATGAGGTCAAGCCATTAGATATTCCTACGTCT 1020
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||
Sbjct 2878 TTCGTACTATGTAAAATCGATCATGTCTATGAGGTTAAGCCATTAGATATTCCTAAGTCT 2937
Query 1021 GTACGACTTCTCGATCGTGGGATATTTCAAATTGTTTTGTCACCTGAGGTTTACAAGACA 1080
||| |||||| |||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct 2938 CTACTACTTCTTGATCGTGGGACATGTCAAATTGTTTTGTCACCTGAGGTTTACAAGACA 2997
Query 1081 TTGTCACTTGAGCTGGTCAAATTTTCAAATGGAAATCCCCAGGTTCTTCAGTTCTTGAGC 1140
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2998 TTGTCACTTGAGCTGGTCAAATTTTCAAATGGAAATCCCCAGGTTCTTCAGTTCTTGAGC 3057
Query 1141 AGTATTGATAGAGAAAGGAATAGGTTATCACAAGAAGTTAAGACAACATCACCCATTTAC 1200
|||||||| |||||| |||||| ||||||||||||||||||||||||||| |||||||||
Sbjct 3058 AGTATTGACAGAGAATGGAATAAGTTATCACAAGAAGTTAAGACAACATCTCCCATTTAC 3117
Query 1201 ATTCCAGGTATATTTGAAAGGAGCTGTTGTGGGCTTGATGACAACGAGAGGAGTATATTT 1260
|| |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||
Sbjct 3118 ATCCCAGGTATATTTGAAAAGAGCTGTTGTGGGCTTGATGACAACGAGAGGGGTATATTT 3177
Query 1261 TTGGACATTGCATGTTTCTTTAATAGGATGGATAAAGACAATGTCGCAATGTTGCTGGAT 1320
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 3178 TTGGACATTGCATGTTTCTTTAATAGGATTGATAAAGACAATGTCGCAATGTTGCTGGAT 3237
Query 1321 GGTTGTGGTTTCTCCGCACATGTCGGATTTAGAAGCCTTGTTGACAAATCACTGTTAACA 1380
|||||||||||||| |||||||||||||||||| |||||||||||||||||||||| |||
Sbjct 3238 GGTTGTGGTTTCTCTGCACATGTCGGATTTAGAGGCCTTGTTGACAAATCACTGTTGACA 3297
Query 1381 ATATCGCAACACAACTTCGTGGACATGCTCAGTTTTATCCAGGCAACTGGTCGAGAAATT 1440
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 3298 ATATCACAACACAACTTGGTGGACATGCTCAGTTTTATCCAGGCAACTGGTCGAGAAATT 3357
Query 1441 GTTCGCCAAGAATCAGCTGACAGACCAGGAGACCGCAGCAGGTTGTGGAATGCCGAAGAT 1500
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 3358 GTTCGCCAAGAATCAGCTGACAGACCAGGAGACCGCAGCAGGTTGTGGAATGCCGACTAT 3417
Query 1501 ATCAGGGATGTATTCATAAATGACACTGGCACATCAGCTATTGAGGGCATTTTCCTAGAC 1560
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 3418 ATCAGACACGTATTCATAAATGACACTGGCACATCAGCTATTGAGGGCATTTTCCTAGAC 3477
Query 1561 ATGTCGAAGCAGACATTTGATGCAAATCCCAATGTATTCGAGAAAATGTGTAACCTTAGA 1620
|||| ||| | | |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 3478 ATGTTGAATCTTAAATTTGATGCAAATCCCAACGTGTTCGAGAAAATGTGTAACCTTAGA 3537
Query 1621 CTGTTGAAATTGTATTGCTCCAAAGTGGAAGAGAAGCATGGAGTATATTTTCCTCAAGGT 1680
||||||||||||||||||||||||| |||||||||||||||||||| |||||| ||||||
Sbjct 3538 CTGTTGAAATTGTATTGCTCCAAAGCGGAAGAGAAGCATGGAGTATCTTTTCCACAAGGT 3597
Query 1681 ATTGAATATTTGCCAAGCAAGCTAAGGCTTCTCCATTGGGAATTTTATCCTTTAAGCTCC 1740
||||||||||||| |||||||||||||||||||||||||||| ||||||| |||| ||
Sbjct 3598 CTTGAATATTTGCCGAGCAAGCTAAGGCTTCTCCATTGGGAATATTATCCTCTAAGTTCT 3657
Query 1741 TTGCCAGAAA-GTTTTAATCCAGAGAATCTTGTAGAGCTTAACTTATCAAGTAGCTGTGC 1799
||||| |||| |||||||||||||||| ||||| ||||||||||| |||||||||||||
Sbjct 3658 TTGCC-GAAAAGTTTTAATCCAGAGAACCTTGTCGAGCTTAACTTGCCAAGTAGCTGTGC 3716
Query 1800 AAAGAAACTTTGGAAAGGAAAAAAGGCAAGGTTTT-TG-A----------GTCTGGGGAA 1847
||||||||||||||||||||||||||||||||||| | | |||||| ||
Sbjct 3717 AAAGAAACTTTGGAAAGGAAAAAAGGCAAGGTTTTGTACAACCAATTCAAGTCTGGAAAA 3776
Query 1848 CCTTAAAAAGATGATACTTAGCTACTCCTACCAGTTAACAAAAATCCCACGACTTTCAAG 1907
||||||||||||| ||||||||||||| |||||||||| ||||||||| ||||||||||
Sbjct 3777 GCTTAAAAAGATGAGACTTAGCTACTCCGACCAGTTAACTAAAATCCCAAGACTTTCAAG 3836
Query 1908 TGCGCCGAATCTTGAGCATATTGATCTTGAAGGTTGTAACAGCTTGTTGAACATTAGCCA 1967
|| | ||||||||||||||||||||||||||||| ||||| ||||||| | |||||||
Sbjct 3837 CGCAACAAATCTTGAGCATATTGATCTTGAAGGTTGCAACAGTTTGTTGAGCCTTAGCCA 3896
Query 1968 GTCCGTTTCTTATCTCAAAAAGATTGtttttttAAATTTAAAGGGCTGCTCGAAGCTGGA 2027
|||| |||||||||| || ||| |||||||| | ||||||||||||||||||||||||||
Sbjct 3897 GTCCATTTCTTATCTTAAGAAGCTTGTTTTTCTGAATTTAAAGGGCTGCTCGAAGCTGGA 3956
Query 2028 GAGTATTCCATCTACAGTTGATTTAGAATCTCTTGAGGTTCTGAATCTTTCTGGCTGCTC 2087
|| ||||||||||| |||||||||||||| ||||||||||| |||||||| || || ||
Sbjct 3957 GAATATTCCATCTATGGTTGATTTAGAATCGCTTGAGGTTCTAAATCTTTCGGGTTGTTC 4016
Query 2088 AAAGCTAGAGAATTTCCCGGAGATCTCACCAAATGTGAAAGAACTGTACATGGGTGGGAC 2147
|||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 4017 AAAGCTAGGGAACTTCCCGGAGATCTCACCAAATGTGAAAGAACTGTACATGGGTGGGAC 4076
Query 2148 TATGATACAAGAAATCCCGTCTTCGATCAAGAATCT-GGTATTGCTTGA-AAAGCTGGAC 2205
||||||||||||||||||||| ||||| ||||| || |||||||||||| ||| ||||||
Sbjct 4077 TATGATACAAGAAATCCCGTCATCGATTAAGAA-CTTGGTATTGCTTGAGAAA-CTGGAC 4134
Query 2206 CTGGAAAACAGCAGACACCTTAAGAATCTTACAACCAGCATCTGCAAGTTAAAGCATCTT 2265
||||||||||| ||||| || ||||||||| |||| ||||||| |||||| |||||||||
Sbjct 4135 CTGGAAAACAGTAGACATCTCAAGAATCTTCCAACAAGCATCTACAAGTTGAAGCATCTT 4194
Query 2266 GAAACTCTGAATCTGTCAGGCTGCACAAGCCTGGAGCGGTTTCCGGACTTGTCGAGAAGG 2325
|||||||| ||||| |||||||||| |||||||||||| ||||| |||| ||||||||||
Sbjct 4195 GAAACTCTAAATCTTTCAGGCTGCATAAGCCTGGAGCGATTTCCAGACTCGTCGAGAAGG 4254
Query 2326 ATGAAATGTTTAAGGTTTCTGGATTTAAGCAGGACAGCCGTTAGAGAGCTACCCTCCTCC 2385
|||||||| ||||||||| |||||||||||||||||| | ||| |||||| ||||| |||
Sbjct 4255 ATGAAATGCTTAAGGTTTTTGGATTTAAGCAGGACAGACATTAAAGAGCTGCCCTCTTCC 4314
Query 2386 ATTTCGTATCTTACTGCTCTTGAAGAACTGAG-ATTTGTAGACTGCA--AGAACCTCG 2440
|| |||||||| ||||||||||| ||||| | ||| ||||||| || |||| ||||
Sbjct 4315 ATATCGTATCTGACTGCTCTTGACGAACT-ATTATTCGTAGACTCCAGGAGAAACTCG 4371
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 127173200505
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5