BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895409
Length=204
Score E
Sequences producing significant alignments: (Bits) Value
AT4G02260.1 | Symbols: RSH1, AT-RSH1, ATRSH1 | RELA/SPOT homolo... 121 3e-27
> AT4G02260.1 | Symbols: RSH1, AT-RSH1, ATRSH1 | RELA/SPOT homolog
1 | chr4:985232-991494 FORWARD LENGTH=3190
Length=3190
Score = 121 bits (65), Expect = 3e-27
Identities = 86/96 (90%), Gaps = 2/96 (2%)
Strand=Plus/Plus
Query 1 GTAAAAGATTATATTGCTACCCTAAAGCATAATGGCTACCAGAGCCTCCATACTTA-TGT 59
||||||||||| ||||| |||| |||| ||||| ||||||||||||||||| || |||
Sbjct 1552 GTAAAAGATTACATTGCAACCCCGAAGCCCAATGGATACCAGAGCCTCCATAC-TACTGT 1610
Query 60 GATTCCGTTCTTGTATGAGAGTATGTTTCGACTGGA 95
|||||| |||||||||||||||||||||||||||||
Sbjct 1611 GATTCCATTCTTGTATGAGAGTATGTTTCGACTGGA 1646
Score = 93.5 bits (50), Expect = 7e-19
Identities = 56/59 (95%), Gaps = 0/59 (0%)
Strand=Plus/Plus
Query 146 TTAGGTCGAAATTCAAGGGGGAAGGCGAGTTGCCTCAACAATGCAGATTTTGCACTCAG 204
|||||| ||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct 1753 TTAGGTAGAAATTCAAGGGGGAAGACGGGTTGCCTCAACAATGCAGATTTTGCACTCAG 1811
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9104544531
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5