BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895419

Length=408
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G12090.1 | Symbols:  | Cornichon family protein | chr4:72421...   654    0.0  


> AT4G12090.1 | Symbols:  | Cornichon family protein | chr4:7242165-7242924 
REVERSE LENGTH=408
Length=408

 Score =  654 bits (354),  Expect = 0.0
 Identities = 391/409 (96%), Gaps = 2/409 (0%)
 Strand=Plus/Plus

Query  1    ATGGGCGATCTACTCGATTGGATTATCTCTTTCTTATTCCTCGTAACCCTTCTCATCATC  60
            ||||||||||||||||||||||||||||||||||||||||||| ||| ||| | ||||||
Sbjct  1    ATGGGCGATCTACTCGATTGGATTATCTCTTTCTTATTCCTCGCAACGCTTATAATCATC  60

Query  61   GTTATTTACCAGTTGACATGTTTGGCGGATTTAGAGTTCGATCGCAGAAACCCTTACGAT  120
            |||||||| ||| ||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct  61   GTTATTTATCAGCTGACATGTTTGGCAGATTTAGAGTTCGATCGCATAAACCCTTACGAT  120

Query  121  GCATCTA-CTAAAATAAACCGGATGGTTCTACCGGAATTTGGTTTACAAGGACTTCTTTG  179
            | ||||| | | ||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  121  GTATCTAGC-AGAATAAACCGAATGGTTCTACCGGAATTTGGTTTACAAGGACTTCTTTG  179

Query  180  CTTATACTATATCTTAACCGGACATTGGTTCATGGCGGTTTTGTCTCTTCCCCACCTTTT  239
            ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  180  CTTATACTATATCCTAACCGGACATTGGTTCATGGCGGTTTTGTCTCTTCCCCACCTTTT  239

Query  240  CTACAACATTAGACTATACATGAAAAGGGAACATTTGGCAGACGTAACAGAGTTATACAA  299
            |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct  240  CTACAACATTAGACTATACATGAAGAGGGAACATTTGGCAGACGTAACAGAGTTATACAA  299

Query  300  CACAAATAAATGGGAACAAAAGAAACGTGTGTACAAGATTGGTCATATAGCTCTCTCCAT  359
            ||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||
Sbjct  300  CACAAATAAATGGGAGCAAAAGAAACGAGTGTACAAGATTGGTCATATAGCTCTCTCCAT  359

Query  360  TTTTATCACATCCTATTGGTTGATCCACTCGGCATTAGGAGACATCTAA  408
            |||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  360  TTTTATCACAACCTATTGGTTGATCCACTCGGCATTAGGAGACATCTAA  408



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 19302815616


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5