BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895426
Length=930
Score E
Sequences producing significant alignments: (Bits) Value
AT1G15990.1 | Symbols: ATCNGC7, CNGC7 | cyclic nucleotide gated... 800 0.0
AT1G19780.1 | Symbols: ATCNGC8, CNGC8 | cyclic nucleotide gated... 595 2e-169
> AT1G15990.1 | Symbols: ATCNGC7, CNGC7 | cyclic nucleotide gated
channel 7 | chr1:5491304-5493772 REVERSE LENGTH=2130
Length=2130
Score = 800 bits (433), Expect = 0.0
Identities = 597/671 (89%), Gaps = 31/671 (5%)
Strand=Plus/Plus
Query 276 TATTGTGGGATCTTCAAAATCTCAGCGCCTTAGTTCAAGGGCTGCAAACAAGTACATTTC 335
||| ||||| |||||||||||||||| | |||| |||||||||||| |||||||||||||
Sbjct 1037 TATGGTGGGGTCTTCAAAATCTCAGCACGTTAGGTCAAGGGCTGCAGACAAGTACATTTC 1096
Query 336 CAGGAGAGGTTTTGTTTTCCAGCGCG-TTAGGTCA-A---GGGTTTCTTC-TTTCGCGCT 389
||||||||||||||||||||| ||| || | | | | ||| |||||| |||||||||
Sbjct 1097 CAGGAGAGGTTTTGTTTTCCATTGCGATT-GCT-ATAGCTGGGCTTCTTCTTTTCGCGCT 1154
Query 390 TCTAC-TCGGGAATATGCTTACTGTTCGTCTTCATTTACTTACTGTTCGTCTCGAGGAAA 448
||| | |||||||||||| || || |||||| | |||||||||||||||||||||||
Sbjct 1155 TCT-CATCGGGAATATGCAGAC--TT-ATCTTCAGTCACTTACTGTTCGTCTCGAGGAAA 1210
Query 449 TGAGGATCAAAAGATGTGACTCGGAACA---G-T--ATCACAGGTCACTTCCACAAAATT 502
|||||||||||||| ||||||| ||||| | | ||||||||||||||||||||||||
Sbjct 1211 TGAGGATCAAAAGACGTGACTCAGAACAGTGGATGCATCACAGGTCACTTCCACAAAATT 1270
Query 503 TGAGGGAAAGAGTCAGACGCTATGATCAATACAAATGGTTAGAGACCAGAGGTGTTA-AG 561
|||||||||||||||||||||||||||||||||||||||||||||| |||||||| | |
Sbjct 1271 TGAGGGAAAGAGTCAGACGCTATGATCAATACAAATGGTTAGAGACAAGAGGTGT-AGAC 1329
Query 562 GAAGAAAATTTAGTTCAGAGTTTAGCTACGGATCTCAGAAGAGACATCAAACGTCATCTT 621
|||||||| |||||||||||||| ||| |||||||||||||||||||||||| |||||
Sbjct 1330 GAAGAAAACATAGTTCAGAGTTTACCTAAGGATCTCAGAAGAGACATCAAACGCCATCTC 1389
Query 622 TGCCTGAGTTTAGTTAGGAGGGTTCCTCTGTTTGCTAATATGAATGAAAGATTACTCGAC 681
|| |||| |||||||||||||||||||||||||||||||||| ||||||||||||| |||
Sbjct 1390 TGTCTGAATTTAGTTAGGAGGGTTCCTCTGTTTGCTAATATGGATGAAAGATTACTTGAC 1449
Query 682 --AA-CTGTGAGAGATTAAAGCCGAGTCTTTACAAGGAAAGCACTTTCATTGTGCGTGAA 738
|| |||||||||||||||||||||||||| || ||||||||||| |||||||||||||
Sbjct 1450 GCAATCTGTGAGAGATTAAAGCCGAGTCTTTTCACGGAAAGCACTTACATTGTGCGTGAA 1509
Query 739 GGAAACCCGGTTAATGAAATGATGTTCATAATCCGAGGCCGGTTAGAGAGTGTAACA-CT 797
||| |||| ||||| |||||||||||||||||||||||||||||||| ||||||||| |
Sbjct 1510 GGAGACCCCGTTAACGAAATGATGTTCATAATCCGAGGCCGGTTAGAAAGTGTAACAAC- 1568
Query 798 AGATGGAGGAAGAAGCTGTTTCTTTAACAGAGGGTTAATATTGAAAGAAGGAGACTTTTG 857
|||||| ||||||||| ||||||| ||||||||||| || |||||||||||||||||
Sbjct 1569 AGATGGGGGAAGAAGCGGTTTCTTCAACAGAGGGTTGTTA---AAAGAAGGAGACTTTTG 1625
Query 858 TGGTGATA-AGCTTCTGACATGGGCTCTTGACCTTAAAGCAGGCTCAATCTTACCTTCTT 916
|||||| | |||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 1626 TGGTGA-AGAGCTTCTGACATGGGCTCTTGACCCTAAAGCAGGCTCAAACTTACCTTCTT 1684
Query 917 CCACAAGAACA 927
|||||||||||
Sbjct 1685 CCACAAGAACA 1695
Score = 298 bits (161), Expect = 7e-80
Identities = 194/210 (92%), Gaps = 1/210 (0%)
Strand=Plus/Plus
Query 77 TAACATCCGAATTGAAGAAAACTACAGGAGATTTTGCTGTAGGAGCTTGGGCTGGTGCTG 136
||||||| || |||||||||||| |||||| |||||| | ||||||||||||||||||||
Sbjct 653 TAACATCAGAGTTGAAGAAAACTGCAGGAGCTTTTGCCGAAGGAGCTTGGGCTGGTGCTG 712
Query 137 CCCATTATCTCCTCTGGTATATGCTTGCAAGCCACATAACTGGAGCATTCTGGTACATGT 196
| ||||||| ||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 713 CTTATTATCTTCTCTGGTATATGCTTGCAAGCCACATAACTGGAGCGTTTTGGTACATGT 772
Query 197 TGTTAGTGGAACGTAATGATACTTGTTGGAGATTTGCGTGT-AAGTTCAGCCAGATCCGT 255
||| |||||| ||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct 773 TGTCAGTGGAGCGTAACGATACTTGTTGGAGATTTGCGTGTAAAGTTCAGCCAGATCCGC 832
Query 256 GACTCTGTGTTCAGATTCTGTATTGTGGGA 285
||||||||||||||||||||||||||||||
Sbjct 833 GACTCTGTGTTCAGATTCTGTATTGTGGGA 862
> AT1G19780.1 | Symbols: ATCNGC8, CNGC8 | cyclic nucleotide gated
channel 8 | chr1:6833885-6836578 REVERSE LENGTH=2262
Length=2262
Score = 595 bits (322), Expect = 2e-169
Identities = 560/671 (83%), Gaps = 31/671 (5%)
Strand=Plus/Plus
Query 276 TATTGTGGGATCTTCAAAATCTCAGCGCCTTAGTTCAAGGGCTGCAAACAAGTACATTTC 335
||| ||||| ||| |||||||||||| | |||| ||||||||||||||||||||||| ||
Sbjct 1142 TATGGTGGGGTCTCCAAAATCTCAGCACGTTAGGTCAAGGGCTGCAAACAAGTACATATC 1201
Query 336 CAGGAGAGGTTTTGTTTTCCAGCGC-GTTAGGTCAAG--GG-TTTCTTCT-TTCGCGCTT 390
||||||| ||||||||||| | || || | | || || ||||| | || || |||
Sbjct 1202 CAGGAGAAGTTTTGTTTTCAATTGCAATT-GCTGTAGCTGGACTTCTTTTGTTTGCTCTT 1260
Query 391 CTAC-TCGGGAATATGCTTACTGTTCGTCTTCATTTACTTACTGTTCGTC-TCGAGGAAA 448
|| | | |||||||||| || || |||||| | |||||| ||||| | | |||||||
Sbjct 1261 CT-CATTGGGAATATGCAAAC--TT-ATCTTCAGTCACTTACGGTTCG-CTTAGAGGAAA 1315
Query 449 TGAGGATCAAAAGATGTGACTCGGAACA---G-T--ATCACAGGTCACTTCCACAAAATT 502
||||||| |||||| |||| || ||||| | | ||||||||||||||||||||||
Sbjct 1316 TGAGGATTAAAAGACGTGATTCCGAACAGTGGATGCATCACAGGTCACTTCCACAAAACC 1375
Query 503 TGAGGGAAAGAGTCAGACGCTATGATCAATACAAATGGTTAGAGACCAGAGGTGTTAAGG 562
|||||||| |||||||||| |||||||||||||||||||| || || ||||| || | |
Sbjct 1376 TGAGGGAACGAGTCAGACGTTATGATCAATACAAATGGTTGGAAACAAGAGGAGTCGACG 1435
Query 563 AAGAAAATTTAGTTCAGAGTTTAGCTACGGATCTCAGAAGAGACATCAAACGTCATCTTT 622
||||||| |||| ||||||||| | | ||||| ||||||||||||||||| ||||| |
Sbjct 1436 AAGAAAACATAGTCCAGAGTTTACCAAAAGATCTTAGAAGAGACATCAAACGCCATCTCT 1495
Query 623 GCCTGAGTTTAGTTAGGAGGGTTCCTCTGTTTGCTAATATGAATGAAAGATTACTCGA-- 680
| || | ||||||| | |||||||||||||||||||||||| |||| |||||||| ||
Sbjct 1496 GTCTAAATTTAGTTCGCAGGGTTCCTCTGTTTGCTAATATGGATGAGAGATTACTAGACG 1555
Query 681 CAA-CTGTGAGAGATTAAAGCCGAGTCTTTACA-AGGAAAGCACTTTCATTGTGCGTGAA 738
||| ||||||||| ||||||| ||||| |||| | || ||||||| ||| ||||| |||
Sbjct 1556 CAATATGTGAGAGACTAAAGCCAAGTCTATACACA-GAGAGCACTTACATAGTGCGAGAA 1614
Query 739 GGAAACCCGGTTAATGAAATGATGTTCATAATCCGAGGCCGGTTAGAGAGTGTAACA-CT 797
||| |||||||||| |||||| | ||||||||||||||||||||||||||||||||| |
Sbjct 1615 GGAGACCCGGTTAACGAAATGCTCTTCATAATCCGAGGCCGGTTAGAGAGTGTAACAAC- 1673
Query 798 AGATGGAGGAAGAAGCTGTTTCTTTAACAGAGGGTTAATATTGAAAGAAGGAGACTTTTG 857
|||||| ||||||||| |||||||||||||||| || ||||||||||||| ||||||||
Sbjct 1674 AGATGGTGGAAGAAGCGGTTTCTTTAACAGAGG-TT--TATTGAAAGAAGGTGACTTTTG 1730
Query 858 TGGTGATA-AGCTTCTGACATGGGCTCTTGACCTTAAAGCAGGCTCAATCTTACCTTCTT 916
|||||| | |||||||||| ||||| ||||||| |||||||||||||| |||||||||||
Sbjct 1731 TGGTGA-AGAGCTTCTGACTTGGGCACTTGACCCTAAAGCAGGCTCAAACTTACCTTCTT 1789
Query 917 CCACAAGAACA 927
||||| |||||
Sbjct 1790 CCACACGAACA 1800
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 45461903035
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5