BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895427

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G02930.1 | Symbols:  | GTP binding Elongation factor Tu fami...   363    1e-99


> AT4G02930.1 | Symbols:  | GTP binding Elongation factor Tu family 
protein | chr4:1295409-1298404 REVERSE LENGTH=1757
Length=1757

 Score =  363 bits (196),  Expect = 1e-99
 Identities = 226/240 (94%), Gaps = 3/240 (1%)
 Strand=Plus/Plus

Query  8    AAATGGATGGTGGAATTCTTGTGGTTTTAGGTCCAGATGGACCCATGCCACAGACAAAAG  67
            |||||||||| |||||||||||||||| ||| ||||||||||||||||| |||||||| |
Sbjct  508  AAATGGATGGCGGAATTCTTGTGGTTTCAGGACCAGATGGACCCATGCCGCAGACAAAGG  567

Query  68   AACATATCCTACTTGCACGCCAGGTTGGTGTTCCCTCACTTGTGTGCTTCTTGAACAAAG  127
            ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  568  AACATATTCTACTTGCACGCCAGGTTGGTGTTCCCTCACTTGTGTGCTTCTTGAACAAAG  627

Query  128  TTGATGTGGTGGATGATCCTGAGCTGTTGGAGCTTGTCGAGATTGAACTACG--A-CTCC  184
            |||||||||||||||| |||||||| ||||||||||||||||| ||||||||  | ||||
Sbjct  628  TTGATGTGGTGGATGACCCTGAGCTCTTGGAGCTTGTCGAGATGGAACTACGTGAGCTCC  687

Query  185  TCAACTTCTACAATTTTCCTGGGGATGATATTCCCATCATCCGAGGATCTGCTCTGTCCG  244
            ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  688  TCAGCTTCTACAAGTTTCCTGGGGATGATATTCCCATCATCCGAGGATCTGCTCTGTCCG  747


 Score =  174 bits (94),  Expect = 6e-43
 Identities = 94/94 (100%), Gaps = 0/94 (0%)
 Strand=Plus/Plus

Query  380   AGAGAGAAGACATTCAGCGTGGAATGGTGATTGCTAAGCCTGGTTCATGCAAGACATACA  439
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  1078  AGAGAGAAGACATTCAGCGTGGAATGGTGATTGCTAAGCCTGGTTCATGCAAGACATACA  1137

Query  440   AGAAGTTTGAAGCAGAGATTTACGTGCTCACAAA  473
             ||||||||||||||||||||||||||||||||||
Sbjct  1138  AGAAGTTTGAAGCAGAGATTTACGTGCTCACAAA  1171


 Score =  163 bits (88),  Expect = 1e-39
 Identities = 134/153 (88%), Gaps = 15/153 (10%)
 Strand=Plus/Plus

Query  244   GGACGTGGAACTGTTGCAA-----C--ATTGAACAGGGAACCATTAAAGTGGGTGAAGAA  296
             |||||||||||||||||||     |  || |||||||||  |||||||||||||||||||
Sbjct  888   GGACGTGGAACTGTTGCAACCGGTCGTATCGAACAGGGAGTCATTAAAGTGGGTGAAGAA  947

Query  297   GTTGAGATATTGGGTTTAC-------GGG-CTTCCACTGAAATCGACTGTAACTGGGGTT  348
             |||||||||||||||||||       |||  |||||||||||||||||||||||||||||
Sbjct  948   GTTGAGATATTGGGTTTACGTGAGGGGGGTGTTCCACTGAAATCGACTGTAACTGGGGTT  1007

Query  349   GAGATGTTCAAGAAGATTTTGGATAATGGACAG  381
             |||||||||||||||||||||||||||||||||
Sbjct  1008  GAGATGTTCAAGAAGATTTTGGATAATGGACAG  1040



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5