BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895453
Length=702
Score E
Sequences producing significant alignments: (Bits) Value
AT4G00893.1 | Symbols: | unknown protein; LOCATED IN: chloropl... 712 0.0
AT4G10660.1 | Symbols: | CDC68-related | chr4:6582535-6583488 ... 152 4e-36
AT4G10695.1 | Symbols: | CDC68-related | chr4:6593774-6594478 ... 60.2 3e-08
> AT4G00893.1 | Symbols: | unknown protein; LOCATED IN: chloroplast;
BEST Arabidopsis thaliana protein match is: unknown protein
(TAIR:AT4G12370.1); Has 220 Blast hits to 215 proteins
in 11 species: Archae - 0; Bacteria - 0; Metazoa - 0; Fungi
- 0; Plants - 220; Viruses - 0; Other Eukaryotes - 0 (source:
NCBI BLink). | chr4:379793-381455 REVERSE LENGTH=1404
Length=1404
Score = 712 bits (385), Expect = 0.0
Identities = 538/611 (88%), Gaps = 13/611 (2%)
Strand=Plus/Plus
Query 88 GCGATAAAG-TTGATTCC-GG-CA-GATAAACTTGTCACTGTCAGCACTTGCCATCCTGG 143
||||||||| ||| |||| || | | ||| | |||||||||||| |||||| |||||||
Sbjct 597 GCGATAAAGTTTG-TTCCGGGTGAGGTTAATCGTGTCACTGTCAGTACTTGCAATCCTGG 655
Query 144 AGCAACTGAGTGGATTACTCAA-GACTTCCCTACTTTTATAAAACCGTTTTACATGCTAA 202
||||||| | ||||||||| || ||||||||||||||| | | | ||||||||||| ||
Sbjct 656 AGCAACTAAATGGATTACT-AACGACTTCCCTACTTTTCTGAGATTGTTTTACATGCAAA 714
Query 203 GCAACCTTGTCTATCGCAGAGATCGATTCTATTGCTTTAACGCAGAAGGAACTTTGTATA 262
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 715 GCAACCTTGTCTATCGGAGAGATCGATTCTATTGCTTTAACGCTGAAGGAACTTTGTATA 774
Query 263 ACTTTGAACCATCTCACCG-CACATGGAACTACATTTGTGCGGATAAACTCAGATGCCCG 321
||||||||||||| | || | ||||| ||||||||||||||||||||||||||||||
Sbjct 775 GCTTTGAACCATCTTATCGTGA-ATGGAGTTACATTTGTGCGGATAAACTCAGATGCCCG 833
Query 322 TATATCCAT-AAAATGCACTATGTGTTGAATGAGATAGCAGTTGCCTTGGTAGAGAAGAA 380
||| ||||| | || || ||| ||| | || || ||||||| |||||||||||||||
Sbjct 834 TATGTCCATGAGAA-CCAATATATGTGGTGTGGGAAAGCAGTTTTCTTGGTAGAGAAGAA 892
Query 381 AGGAGAGCTCTTTGTCATGTTTACATGCAGCAACCAGAAGCCAATGGTGTATAAACTATT 440
||||||||||||||| ||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 893 AGGAGAGCTCTTTGTAATGTTTACATGTAGCAACGAGAAGCCAATGGTGTATAAACTATT 952
Query 441 CTCTTTGGAGTGGAAGGAAATGACTAGGACAACACTTGATGGCTTGACAATCTTTGTCAG 500
|||| || |||||||||| ||| |||||||||||||||||| ||||| | ||||||||
Sbjct 953 CTCTATGAAGTGGAAGGAGTTGAGTAGGACAACACTTGATGGGATGACATTTTTTGTCAG 1012
Query 501 TTTTTATAACTCTGAGTTGA-GAATTAATCTCCCATGGATGAGGAACAATGTCTATTTCT 559
|||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 1013 TTTTTATAACTCTGAGTTGAGGAA-TAATCTCCCATGGATGAGGAACAATGTCTATTTCT 1071
Query 560 CAAGGTTTGGTTACAACCGCAAACATTGTGTATCCTACTCGTTTGATGAAAGCAGGTACA 619
|||||||||||||||| |||||||||||||| || | || |||||||||||||||||||
Sbjct 1072 CAAGGTTTGGTTACAATCGCAAACATTGTGTTTCTTTTTCATTTGATGAAAGCAGGTACA 1131
Query 620 ATCCGCGTAAGGAATGGGATAAATGGGTAGAACTCTGTCCTCCTCAAAGCCTATGGATCG 679
|| ||| ||| |||||||| ||||||||||||| ||||||||||||||||| ||||| |
Sbjct 1132 ATACGCCTAAAGAATGGGAGCAATGGGTAGAACTTTGTCCTCCTCAAAGCCTTTGGATTG 1191
Query 680 ATACGCCGAAG 690
|||||||||||
Sbjct 1192 ATACGCCGAAG 1202
> AT4G10660.1 | Symbols: | CDC68-related | chr4:6582535-6583488
FORWARD LENGTH=954
Length=954
Score = 152 bits (82), Expect = 4e-36
Identities = 396/538 (74%), Gaps = 59/538 (11%)
Strand=Plus/Plus
Query 127 AGCACTTGCCATCCTGGAGCAACTGAGTGGATTACTCAAGACTTCCC-TACT-T-TTATA 183
|||| |||| ||||||||||||||||||||||||||||||| || | | || | ||| |
Sbjct 364 AGCATTTGCTATCCTGGAGCAACTGAGTGGATTACTCAAGAATTTTCATGCTCTCTTAGA 423
Query 184 AA--ACCGTTTTACATGC-TAAGCAACCTTGTCTATCGC-AGA-GATCGA-TTCTATTGC 237
||| | |||||| || |||||||||||||| || | | |||| | ||||||||
Sbjct 424 TTTGACCCAT--ACATGCATA-GCAACCTTGTCTAT-GCCA-ACGATC-ACTTCTATTGT 477
Query 238 TTTAACGCAGAAGGAACTTT-GTATAACTTTGAACCATCT-CACCGCACA-TG-G--AAC 291
|||| | ||| ||| ||| || | ||||||| | || | ||||||| || | |||
Sbjct 478 TTTAGCTCAGGAGGTGTTTTAGT-TGACTTTGATGTAGCTTC-CCGCACAATGAGTGAAC 535
Query 292 TA-CATTTGTGCGGATAAAC-TCAGATGCCCGTATATCCATAA--A-A-TGCACTATGTG 345
| ||| | | || ||| | |||||| | ||||| | ||| | | |||| ||| |
Sbjct 536 AAGCAT--G-GA--ATGAACAT-AGATGCGCTTATATGCGTAATGATAATGCAGAATG-G 588
Query 346 TTGAATGA---GAT-AGCAGTTGCCTTGG-TAGAGAAGAAAGGAGAGCTCTTTGTCATGT 400
|| ||| || || | || | |||| | ||| ||||||||||||||||| ||||||
Sbjct 589 TTTAATCTTCCGAAGAGAATTTAC-TTGGCT-GAGCAGAAAGGAGAGCTCTTTCTCATGT 646
Query 401 TTACATGCAGCAACCAGA-AGCCAATGGTGTATAAACTAT-TCTCTTTGGAGTGGAAGGA 458
|||||| |||| | ||| | || |||||||||||||| | |||| | | ||| ||||
Sbjct 647 ATACATGTAGCAGCGAGATA-CCGATGGTGTATAAACT-TGTCTCCTCAAATTGGGAGGA 704
Query 459 AATGACTAGGACAACACTTGATGGCTTGACAATCTTTGTCA-GTTTTTATAACTCTGAGT 517
|| | ||| || || ||||| ||| |||||||||||| || || | ||| ||| |||
Sbjct 705 GATAAATAGTACTACTCTTGACGGCGTGACAATCTTTG-CAAGTATGTATTCCTCGGAGA 763
Query 518 TGAGAATTA-ATCTCCCATGG-ATGAGGAACAATGTCTATTTCTCAAGGTTTGGTT-ACA 574
|||| || || | | ||| |||||||||| ||| || ||| ||| || ||||| | |
Sbjct 764 CGAGA-TTGGATGTTCT-TGGGATGAGGAACAGTGTGTACTTCCCAAAGTATGGTTTAGA 821
Query 575 ACCGCAAAC-ATTGTGTATCCTACTCGTTTGATGAAAGC-AGGTACAATCCGCGTAAG 630
|||| || ||||||||||||||||||||||| || |||||| |||||||||||
Sbjct 822 TT-GCAAGGGAT-GTGTATCCTACTCGTTTGATGAA-GCCAGGTACTATCCGCGTAAG 876
> AT4G10695.1 | Symbols: | CDC68-related | chr4:6593774-6594478
REVERSE LENGTH=705
Length=705
Score = 60.2 bits (32), Expect = 3e-08
Identities = 38/41 (93%), Gaps = 0/41 (0%)
Strand=Plus/Plus
Query 127 AGCACTTGCCATCCTGGAGCAACTGAGTGGATTACTCAAGA 167
|||| |||| ||||||||||||||||||||||||||||||
Sbjct 406 AGCATTTGCTTTCCTGGAGCAACTGAGTGGATTACTCAAGA 446
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34008517519
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5