BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895473
Length=1380
Score E
Sequences producing significant alignments: (Bits) Value
AT4G12540.1 | Symbols: | unknown protein; Has 29 Blast hits to... 944 0.0
> AT4G12540.1 | Symbols: | unknown protein; Has 29 Blast hits
to 26 proteins in 11 species: Archae - 2; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 27; Viruses - 0; Other Eukaryotes
- 0 (source: NCBI BLink). | chr4:7429876-7431602 REVERSE
LENGTH=1386
Length=1386
Score = 944 bits (511), Expect = 0.0
Identities = 576/608 (95%), Gaps = 2/608 (0%)
Strand=Plus/Plus
Query 255 TATGCAGCCATGGTTTCCTCGATTGGAAGAAGCGATGTCTGATTTTCAGTTGCTTCCGGA 314
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 288 TATGCAGCCATGGTTTCCTCGATTGCAAGAAGCGATGTCTGATTTTCAGTTGCTTCCAGA 347
Query 315 GGATAAGGAAGGACAGTCTTTGATGAGCACAAACAAAGAAGAAGATTTGTTTGATGTTGA 374
|||| |||||| |||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 348 GGATCAGGAAGAACAGTCTTTGATGAGCACAAACGAAGAAGAAGATTTGTTTGATGTTGA 407
Query 375 GAGTCCTGAGCCTACTCAATTTGAGCCCTTAGTCTCTCCTTCTCCTCTCGTGCATTGGCG 434
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 408 GAGTCCTGAGCCTACTCAATTTGAGCCCTTAGTCTCTCCTTCTCCTCTTGTGCATTGGCG 467
Query 435 TGGTGATCATAACGCAGACAAGGGTAGACAACTCTTTCTTTTGACACCACTACCCTTAGG 494
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 468 TGGTGATCATAACGCAGACAAGGGTAGACAACTCTTTCTTTTGACACCACTACCCTTAGG 527
Query 495 AAAATCTGAATTCCTTAAACATCAGAATGCGTCTAAGCTGACAGCTAAAAGGATTTTCCC 554
||||||||||||||| ||||| |||||||| |||||||| ||||||||||||||||| ||
Sbjct 528 AAAATCTGAATTCCTAAAACACCAGAATGCATCTAAGCTTACAGCTAAAAGGATTTTTCC 587
Query 555 AGACGA-TACTGCAAATAAATCGCTTGAAGCTTCTAAAGAAACAAGTGATGATGTTTTAG 613
|||| | | ||||||| || |||||||||||||||||||||||||||||||||||||||
Sbjct 588 AGAC-ACTGTTGCAAATGAACCGCTTGAAGCTTCTAAAGAAACAAGTGATGATGTTTTAG 646
Query 614 GAGGTGAGTTGATGAAAACTGCAGGACTTGGTAACTCTTTAGGCCATGCCATTGATTTCT 673
||||||||| | |||||||||||||||||||||| ||||||| ||||||||| |||||||
Sbjct 647 GAGGTGAGTCGTTGAAAACTGCAGGACTTGGTAAATCTTTAGTCCATGCCATGGATTTCT 706
Query 674 CTGAAAAATTGGTAGAGTATGAGCCATGTTCTTCACCAGTTCTCAGGAGAAAAATTCAGT 733
||||||| ||||| |||||| ||||||||||||||||||||||||||||||| |||| ||
Sbjct 707 CTGAAAATTTGGTTGAGTATAAGCCATGTTCTTCACCAGTTCTCAGGAGAAAGATTCTGT 766
Query 734 CTGAGCTTCTAATGACACCTTGCTTGAAGATGTCGCCTCCGAAATCGTGTACAATGTTTA 793
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 767 CTGAGCTTCTAATGACACCTTGCTTGAAGCTGTCGCCTCCGAAATCGTGTACAATGTTTA 826
Query 794 AACCGGTTCCTGAAACTTCTCAACTGGTAAAGCATGGGGCTTGTAAGTCTACCTGCTCTG 853
|||||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||
Sbjct 827 AACCGGTTCCTGAATCTTCTCAACTGGGAAAGCAAGGGGCTTGTAAGTCTACCTGCTCTG 886
Query 854 AACTGGGA 861
|| |||||
Sbjct 887 AATTGGGA 894
Score = 527 bits (285), Expect = 1e-148
Identities = 443/512 (87%), Gaps = 40/512 (8%)
Strand=Plus/Plus
Query 892 GGATCCTCTGGTATTGAAACAACAGACAACCTCTGCTCGAAGTATCCTGAGCTCTTGGGA 951
||||| ||||||||||||| ||||||||| ||||||||||||||||||||||||||||||
Sbjct 892 GGATCATCTGGTATTGAAAAAACAGACAATCTCTGCTCGAAGTATCCTGAGCTCTTGGGA 951
Query 952 ATGCAACATGCTCCAATTAC-ACGAAAAACGGATCTTGAATCCTCGCCAGTTTGGTGGTT 1010
|| ||||||||||| || || | ||||||||||||||||||||||||| |||||||||||
Sbjct 952 ATACAACATGCTCCGATAACTA-GAAAAACGGATCTTGAATCCTCGCCGGTTTGGTGGTT 1010
Query 1011 TTCTCCTCCTAAAACATGTGTTTTAATGGAGCCTTTGAATGAGAAGAAACCGATTGATGA 1070
|||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||
Sbjct 1011 TTCTCCTCCTAAAACATGTGTTTTAATGGAGCCTGTGAATGAGAAGAAACCAATTGATGA 1070
Query 1071 AACTGGTGGATCCAGAATGGTATCCTCATTTGATTTGCCAAACATTA-A--AG---CAAA 1124
|||||||||||| | | | | || | || |||||||||| | || ||||
Sbjct 1071 AACTGGTGGATC-----T--T-T--TGAT--G-TT--CCAAACATTATACCAGAAGCAAA 1115
Query 1125 ACACACTACAGACGGAAGCATGTCAATGGTGGTTGAGAGTACTCCATTATTTAAAGAACC 1184
|||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1116 ACACACTACAGAGGGAAGCATGTCAATGGTGGTTGAGAGTACTCCATTGTTTAAAGAACC 1175
Query 1185 AGAGAGCATAATGAC-A-AAA--G--CA---G--G-TGAGAATACTTTGAAGAAAGAGCT 1232
||||||||||||||| | ||| | || | | ||||| |||| |||||||||||||
Sbjct 1176 AGAGAGCATAATGACGAGAAACAGAACAAAAGCAGGTGAGAGTACTCTGAAGAAAGAGCT 1235
Query 1233 ATGGACAAGATTTGAAGAAGCATCAATTCATGATAGTCGGTTTAGTTCGATGACAACAAC 1292
|||||||||||||||||||||| | |||||||| |||||||| | ||||||||||||||
Sbjct 1236 ATGGACAAGATTTGAAGAAGCAACGATTCATGACAGTCGGTTCAACTCGATGACAACAAC 1295
Query 1293 AACGA---TGAGAGGAAATAAGCAGAAAGAGTT-CATGGAAATGTTAGAGGAAGTGAGTG 1348
||| | ||||||||||||| ||||| ||| ||||||||||||||| ||||||||||
Sbjct 1296 AACAACAGTGAGAGGAAATAATAAGAAAT-GTTTCATGGAAATGTTAGAAGAAGTGAGTG 1354
Query 1349 GCAATGAGGAAAATCAGGAGTTAAATTTATGA 1380
||||||||||| |||| ||||||| | |||||
Sbjct 1355 GCAATGAGGAAGATCATGAGTTAAGTGTATGA 1386
Score = 268 bits (145), Expect = 8e-71
Identities = 219/253 (87%), Gaps = 11/253 (4%)
Strand=Plus/Plus
Query 1 ATGGAACCTTATATAAGCAGAAGAGATGATTTTGTTAGAGGAA-TGAAACATATAGAAGA 59
|||||||||||||||| |||||||||| | |||| | || || |||| ||||||
Sbjct 1 ATGGAACCTTATATAACCAGAAGAGAT-A--CAGTTA-ATCAAGTGTTACATGCAGAAGA 56
Query 60 AGACCATGGAGGTGGTGGCAGTGATTGTGAACTAGATCAACTCTTCCTTGTACATTCTGA 119
||| | || | | || |||||||||| | ||||||||||||||||| ||||||||
Sbjct 57 AGA--A--GAAG-AAT-ACAATGATTGTGAATTGGATCAACTCTTCCTTGTGCATTCTGA 110
Query 120 TATTAGATCTGTTCTTCTCCAGATTGATGAGCTTGTTGTTGAAGCCACAAAGCGAAAGAC 179
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 111 TATTAGATCTGTTCTTCTCCAGATTGATGAGCTTGTTGTTGAAGCCACAAAGCGTAAGAC 170
Query 180 CGTGACCAAACACGGGTTAAGAGAAGTTGAATCTTTCAGATTTGTGTTGTCTGATATGCT 239
||||| ||| |||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 171 CGTGAGCAAGCACGGGTTAATAGAAGTTGAATCTTTCAGAACTGTGTTGTCTGATATGCT 230
Query 240 TTCCTCACTAAAG 252
|||||||||||||
Sbjct 231 TTCCTCACTAAAG 243
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67971537930
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5