BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg895482 Length=171 Score E Sequences producing significant alignments: (Bits) Value AT1G29965.1 | Symbols: | Ribosomal protein L18ae/LX family pro... 215 1e-55 AT1G29970.2 | Symbols: RPL18AA | 60S ribosomal protein L18A-1 |... 198 1e-50 > AT1G29965.1 | Symbols: | Ribosomal protein L18ae/LX family protein | chr1:10498310-10499462 REVERSE LENGTH=774 Length=774 Score = 215 bits (116), Expect = 1e-55 Identities = 155/173 (90%), Gaps = 5/173 (3%) Strand=Plus/Plus Query 1 ATGGGTGTTTTCAGGCTTCACCAGTACCAAGTCGTCGTAAGAGCTCTCCCGACGGAG-AA 59 ||| ||||| ||||||| ||||||||||||||||| | | ||||||||||||||||| || Sbjct 90 ATGAGTGTTATCAGGCTGCACCAGTACCAAGTCGTAGGACGAGCTCTCCCGACGGAGAAA 149 Query 60 GAATGAGCAGCCGAAGATTTACATGATGAAGCTCTGGACAGACGAACGAGGTTCTTGCCA 119 | ||||||| || |||||||||| ||||||||| ||| || ||||||||||||||||||| Sbjct 150 G-ATGAGCAACCAAAGATTTACAGGATGAAGCTATGGGCA-ACGAACGAGGTTCTTGCCA 207 Query 120 AATCCAAGTTCTGGTACTTCTTAAGGAGGCAGAAGAAGGTGAAGATA-AGTAA 171 |||||||||||||||||| |||||||||||| ||||||||||||| | ||||| Sbjct 208 AATCCAAGTTCTGGTACTACTTAAGGAGGCAAAAGAAGGTGAAGA-AGAGTAA 259 > AT1G29970.2 | Symbols: RPL18AA | 60S ribosomal protein L18A-1 | chr1:10498351-10501427 REVERSE LENGTH=1162 Length=1162 Score = 198 bits (107), Expect = 1e-50 Identities = 140/155 (90%), Gaps = 5/155 (3%) Strand=Plus/Plus Query 19 CACCAGTACCAAGTCGTCGTAAGAGCTCTCCCGACGGAG-AAGAATGAGCAGCCGAAGAT 77 ||||||||||||||||| | | ||||||||||||||||| ||| ||||||| || ||||| Sbjct 537 CACCAGTACCAAGTCGTAGGACGAGCTCTCCCGACGGAGAAAG-ATGAGCAACCAAAGAT 595 Query 78 TTACATGATGAAGCTCTGGACAGACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACT 137 ||||| ||||||||| ||| || ||||||||||||||||||||||||||||||||||||| Sbjct 596 TTACAGGATGAAGCTATGGGCA-ACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACT 654 Query 138 TCTTAAGGAGGCAGAAGAAGGTGAAGATA-AGTAA 171 |||||||||||| ||||||||||||| | ||||| Sbjct 655 ACTTAAGGAGGCAAAAGAAGGTGAAGA-AGAGTAA 688 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 7444599948 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5