BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895482

Length=171
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G29965.1 | Symbols:  | Ribosomal protein L18ae/LX family pro...   215    1e-55
  AT1G29970.2 | Symbols: RPL18AA | 60S ribosomal protein L18A-1 |...   198    1e-50


> AT1G29965.1 | Symbols:  | Ribosomal protein L18ae/LX family protein 
| chr1:10498310-10499462 REVERSE LENGTH=774
Length=774

 Score =  215 bits (116),  Expect = 1e-55
 Identities = 155/173 (90%), Gaps = 5/173 (3%)
 Strand=Plus/Plus

Query  1    ATGGGTGTTTTCAGGCTTCACCAGTACCAAGTCGTCGTAAGAGCTCTCCCGACGGAG-AA  59
            ||| ||||| ||||||| ||||||||||||||||| | | ||||||||||||||||| ||
Sbjct  90   ATGAGTGTTATCAGGCTGCACCAGTACCAAGTCGTAGGACGAGCTCTCCCGACGGAGAAA  149

Query  60   GAATGAGCAGCCGAAGATTTACATGATGAAGCTCTGGACAGACGAACGAGGTTCTTGCCA  119
            | ||||||| || |||||||||| ||||||||| ||| || |||||||||||||||||||
Sbjct  150  G-ATGAGCAACCAAAGATTTACAGGATGAAGCTATGGGCA-ACGAACGAGGTTCTTGCCA  207

Query  120  AATCCAAGTTCTGGTACTTCTTAAGGAGGCAGAAGAAGGTGAAGATA-AGTAA  171
            |||||||||||||||||| |||||||||||| ||||||||||||| | |||||
Sbjct  208  AATCCAAGTTCTGGTACTACTTAAGGAGGCAAAAGAAGGTGAAGA-AGAGTAA  259


> AT1G29970.2 | Symbols: RPL18AA | 60S ribosomal protein L18A-1 
| chr1:10498351-10501427 REVERSE LENGTH=1162
Length=1162

 Score =  198 bits (107),  Expect = 1e-50
 Identities = 140/155 (90%), Gaps = 5/155 (3%)
 Strand=Plus/Plus

Query  19   CACCAGTACCAAGTCGTCGTAAGAGCTCTCCCGACGGAG-AAGAATGAGCAGCCGAAGAT  77
            ||||||||||||||||| | | ||||||||||||||||| ||| ||||||| || |||||
Sbjct  537  CACCAGTACCAAGTCGTAGGACGAGCTCTCCCGACGGAGAAAG-ATGAGCAACCAAAGAT  595

Query  78   TTACATGATGAAGCTCTGGACAGACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACT  137
            ||||| ||||||||| ||| || |||||||||||||||||||||||||||||||||||||
Sbjct  596  TTACAGGATGAAGCTATGGGCA-ACGAACGAGGTTCTTGCCAAATCCAAGTTCTGGTACT  654

Query  138  TCTTAAGGAGGCAGAAGAAGGTGAAGATA-AGTAA  171
             |||||||||||| ||||||||||||| | |||||
Sbjct  655  ACTTAAGGAGGCAAAAGAAGGTGAAGA-AGAGTAA  688



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 7444599948


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5