BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895488
Length=1335
Score E
Sequences producing significant alignments: (Bits) Value
AT4G22290.1 | Symbols: | Ubiquitin-specific protease family C1... 922 0.0
> AT4G22290.1 | Symbols: | Ubiquitin-specific protease family
C19-related protein | chr4:11782905-11785816 REVERSE LENGTH=1718
Length=1718
Score = 922 bits (499), Expect = 0.0
Identities = 1099/1378 (80%), Gaps = 83/1378 (6%)
Strand=Plus/Plus
Query 1 ATGGCGGGTC-GACTACAATCTCACCAATTACCAAGTGGACTCTACGTTTCAGGTAAA-C 58
|||||||||| || | ||||| ||||| |||||| |||||||||||| || || ||| |
Sbjct 87 ATGGCGGGTCGGA-TCCAATCCCACCAGCTACCAAATGGACTCTACGTATC-GGGAAAGC 144
Query 59 TCGAACAACCCAAAGAACGACCACCGACAATGGCGGCTCGTGCTATGCCTTACACCGGAG 118
| || ||||| ||||| ||||||||||||||||||||||| ||| |||||||||||||||
Sbjct 145 TTGAGCAACCAAAAGAGCGACCACCGACAATGGCGGCTCGAGCTGTGCCTTACACCGGAG 204
Query 119 GCGATATCAAGAAATCCGGCGAGCTCGGAAGGATGTTCGACATCTCCGTCAAT-GATCCC 177
|||| ||||||||||||||||||||||||||||||||||||||||||||| | ||| |
Sbjct 205 GCGACATCAAGAAATCCGGCGAGCTCGGAAGGATGTTCGACATCTCCGTC-GTCGAT-TC 262
Query 178 A-CCTCGTTTCAAAGACCTCCGTCGATT-TTC-TCCGG-CG-AAT--CAGC-----TA-G 224
| | || |||||| |||| ||| || || || | ||| | ||| |||| || |
Sbjct 263 AGCTTCTTTTCAAGGACCACCGCCG-TTAATCGT-CGGTGGTAATAGCAGCGGAGGTACG 320
Query 225 AC-A-GCCACCGCCACCGCCACGTGTCCCCTCCGCTTCGTCTTCGAATCCGAATAGTGGA 282
| | || | | | ||||||||||| ||||| ||| ||||| || || || ||||||
Sbjct 321 TCAAGGCTTCAGGCGCCGCCACGTGT---CTCCGGTTCTTCTTCAAACCCTAACAGTGGA 377
Query 283 TCCGTTCGATCCGGATCTCAA-TC-GGGTCTAATT-AGAAAATCTTCAGGTCCTCTTTCA 339
||||||||||| || || ||| || || || || ||||| || |||||||| || ||
Sbjct 378 TCCGTTCGATCTGG-TCCCAACTCTGGTTC-GGTTAAGAAATTC-TCAGGTCCACTCTCT 434
Query 340 CAGCTTCAACCCACCGGTTTAATCACCTCCGGTCCGCTTAATTCGTCCGGTCCAATTGGG 399
|||||||| || ||||||||||| ||||||||| | ||| ||| || ||||||||| |
Sbjct 435 CAGCTTCAGCCAACCGGTTTAATTACCTCCGGTTCTCTTGGTTCTTCGGGTCCAATTTTG 494
Query 400 TCCGGGTCAAGAAGGTCGGGTCAGATT-GATCAACATCATCAAACGAGTAATACAAG-AT 457
|||||||| |||||||||||||| ||| ||| || | ||| ||||||| | || |
Sbjct 495 TCCGGGTCTAGAAGGTCGGGTCA-ATTGGAT---CA-C--CAATTGAGTAAT-CTAGCGT 546
Query 458 CGAGCAAACCCAAATATGGATCGGCGGTTACG-GTTTTGAATTCG--GATCCGATTCGGG 514
||||||| || ||||| || ||| |||| ||| || || || || || ||| ||||||
Sbjct 547 CGAGCAAGCCTAAATACGGGTCGTCGGTGACGAGTCTT-AA--CGTAGACCCGGTTCGGG 603
Query 515 TCGGGTTTAGAGTACCAAAAGCTGTGATTTGGGCAGTGATTG-TAGTTGCAGG-GATGGG 572
||||||||| |||||||||||| || ||||||| || ||| |||| || || ||||||
Sbjct 604 TCGGGTTTAAAGTACCAAAAGCAATGGTTTGGGCGGT-TTTGATAGTGGC-GGCGATGGG 661
Query 573 TTTACTAATTGGTGCGTTT-TTATCTGTGGCGGTGAAGAAGCCATTAGTTG--TGGTGGT 629
|| || | || || ||| ||| |||||||||||||||| || | | || || | |
Sbjct 662 ATTGCTTGTGGGAGCTTTTCTTA-CTGTGGCGGTGAAGAAACCGGT-GGTGATTGCT-GC 718
Query 630 GATTGTGGCGGCCA-TTTTTCCGGCCGTCGTGGTTTTTGTGTGGAATTGTATTTGGAGAA 688
| || | || | || ||| ||| || |||||||||| || |||||||| |||||||||
Sbjct 719 GGTTTTAGCAG-CAGTTTGTCCTGCAATCGTGGTTTTGGTTTGGAATTGCGTTTGGAGAA 777
Query 689 GAAGAGGGTTAATGGGTTTCATCAAGAATTATCCAGATGCTGTGATTAGAGGCGCCATTG 748
||| |||||| || |||| ||||| || ||||||||||||| | ||||||| |||||||
Sbjct 778 GAAAAGGGTTGTTGAGTTTTATCAAAAAGTATCCAGATGCTGAGCTTAGAGGTGCCATTG 837
Query 749 ATGGACAGTTCATCAAGGTCACAGGGGTTGTAACATGTGGAAGTATCCCGCTT-GAGTCG 807
||||||| ||| | ||||| ||||||||||| ||||||||||| || || || || ||
Sbjct 838 ATGGACAATTCGTTAAGGTTACAGGGGTTGTGACATGTGGAAGCATTCC-TTTGGAATCT 896
Query 808 TCATACCAAAGGATACCGAGATGTGTTTATGTATCGACGGAATTGTATGAGTACAAAGGT 867
|| | |||||| | ||| ||||| ||||||||||| ||||| |||||||| |||||||||
Sbjct 897 TCGTTCCAAAGAACACCAAGATGCGTTTATGTATCCACGGAGTTGTATGAATACAAAGGT 956
Query 868 TTTTGTGGGAAATCCGCTAACTTGAAACATAGATGTTTTTCGTGGGGATGC-AGACATGC 926
||| ||||||||||||| ||| |||||| |||| ||||| ||||||| | ||||||||
Sbjct 957 TTTGGTGGGAAATCCGCAAACCCAAAACATCGATGCTTTTCTTGGGGAT-CTAGACATGC 1015
Query 927 TGAGAGATATGTATCGGATTTTTACATTTCGGACTTT-CAATCCGGATTGCGAGCACTTG 985
|||| |||||| |||||||||||||| ||||| ||| ||||| |||||||||||||| |
Sbjct 1016 AGAGAAATATGTGTCGGATTTTTACATCTCGGA-TTTCCAATCTGGATTGCGAGCACTAG 1074
Query 986 TTAAAGCAGGATATGGATCAAAAGTTTCTCCAATTGTCAAACCAACAACAGTAGCTAATG 1045
| ||||||||||||||||||||||||||||| |||||||||| | ||||| |||||||
Sbjct 1075 TAAAAGCAGGATATGGATCAAAAGTTTCTCCTTTTGTCAAACCGGCGACAGTGGCTAATG 1134
Query 1046 TAACCTCACA-AACTAAGGATTTATCTCCAAGCTTTC-TACAA-TGGTTAG-CGGATCGC 1101
|||| | || ||| || ||||||||||| ||| ||| || || ||| | | | ||||||
Sbjct 1135 TAACAACGCAGAAC-AAAGATTTATCTCCCAGC-TTCTTA-AAGTGGCT-GTCAGATCGC 1190
Query 1102 AACCTTTCCAAC-GATAACTGTGCCATGCGTCTCAAAGAAGGATACATAAAAGAAGGGAG 1160
||||| | || | ||| || ||| |||||||||||||||||||||||||||||||| ||
Sbjct 1191 AACCTCT-CAGCTGATGACCGTGTTATGCGTCTCAAAGAAGGATACATAAAAGAAGGAAG 1249
Query 1161 CACCGTAAGCGTGATGGGAATGGTGAGGCGACACGACAATGTTCTGATGATCA-TTCCTC 1219
||| || ||||||||||| ||||| || | |||||||| ||||||||||| | ||||||
Sbjct 1250 CACAGTGAGCGTGATGGGGATGGTAAGAAGGCACGACAACGTTCTGATGAT-AGTTCCTC 1308
Query 1220 CTGCCGAATCAATCGCCACTGGCTGCAAATGGTGGCGTTGCCTTCT-CCCAACTTATGTG 1278
| || ||| || || ||| ||| ||| ||||||| ||||| || |||||| || |
Sbjct 1309 CGGCAGAAGCAGTCTCCAGTGGGTGCCGGTGGTGGCACTGCCT-CTTCCCAACCTACGCA 1367
Query 1279 GATGGCCTTA-TCATTACTTGTGATGAGAACCAAAATGCTGATGTCATTCCTGTCTGA 1335
|||||| ||| |||| || || || || || ||||| |||||||||||||||||||||
Sbjct 1368 GATGGC-TTAATCATAACCTGCGACGATAATCAAAACGCTGATGTCATTCCTGTCTGA 1424
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 65712513405
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5