BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895493
Length=1362
Score E
Sequences producing significant alignments: (Bits) Value
AT4G03820.2 | Symbols: | Protein of unknown function (DUF3537)... 2054 0.0
> AT4G03820.2 | Symbols: | Protein of unknown function (DUF3537)
| chr4:1771887-1774422 REVERSE LENGTH=1680
Length=1680
Score = 2054 bits (1112), Expect = 0.0
Identities = 1264/1339 (94%), Gaps = 4/1339 (0%)
Strand=Plus/Plus
Query 1 ATGGAAGAATCATCAAACCAACAATTCCTCAACTCCTCA-ACCCGACCCGACCCGATCCA 59
|||||||||||||||||||||||| ||||||||||| | ||||||||||||||||| ||
Sbjct 43 ATGGAAGAATCATCAAACCAACAAATCCTCAACTCC-GAGACCCGACCCGACCCGATTCA 101
Query 60 AAAACCACCGGAATCACCAGCCACCAAATTCTCGTTCCCGAAACTCCTT-CTCTGGTTCG 118
|||||||||||||||||||||||||||| |||| ||||||| ||| ||| |||||||| |
Sbjct 102 AAAACCACCGGAATCACCAGCCACCAAACTCTCATTCCCGAGACT-CTTCCTCTGGTTTG 160
Query 119 ATCAATCAAGTCGCGTCAAAACTCTGCTTTCATGGTCCATCTTCTTCCTCCTCGCCGTCA 178
||||||||| |||| ||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 161 ATCAATCAAATCGCATCAAAACTCTGCTCTCATGGTCCATCTTCTTCCTCCTCGCCGTCA 220
Query 179 TCGTCCCAATGATCTCTCACTTCGTGCTAATCTGCGCCGACTGCGATTTCAAACACCGTC 238
|||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||
Sbjct 221 TCGTCCCAATGATCTCACACTTCGTGCTAATCTGCGCCGATTGCGATTTCAAACACCGTC 280
Query 239 GTCCTTACGACGGTTTAGTGCAGCTTTCGTTATCGATCTTCGCCGGAATCTCGTTCGTTA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 281 GTCCTTACGACGGTTTAGTGCAGCTTTCGTTATCGATCTTCGCCGGAATCTCGTTCGTTA 340
Query 299 GTCTCTCAGATTGGTCCAAGAAATATGGAATCCGAAGATTTCTCTTCTTCGATAAGCTTA 358
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 341 GTCTCTCAGATTGGTCCAAGAAATATGGAATCCGAAGGTTTCTCTTCTTCGATAAGCTTA 400
Query 359 AAGATGTTAGCGATAAAGTTAGGTTCGGATACGAAGCTGAAATCCAGAGATCAATGAAGC 418
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||
Sbjct 401 AAGATGTTAGCGATAAAGTTAGGATCGGATACGAAGCTAAAATCCAGAGATCAATGAAGC 460
Query 419 TACTGGCAATCTTCGTCCTTCCATCGATAACGCTTCAAGCGATTTATCGCATTTGGTGGT 478
|||| || ||||| ||||||||||||| |||||||||||| || ||||||||||||||||
Sbjct 461 TACTAGCTATCTTTGTCCTTCCATCGACAACGCTTCAAGCTATCTATCGCATTTGGTGGT 520
Query 479 ATGCTTCAGGCTTCAACCAAATCCCATACATAATCAACCCAATGGTGAGCCATGTCTTAG 538
||||||||||||| ||||||||||| ||||| || ||||||| | |||||||||||||||
Sbjct 521 ATGCTTCAGGCTTTAACCAAATCCCTTACATTATAAACCCAACGCTGAGCCATGTCTTAG 580
Query 539 CCTGCACACTCCAGCTCTCCTCTTGGCTCTACCGTACATCACTCTTCATCATCGCTTGTA 598
||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct 581 CCTGCACACTCCAGCTCTCTTCTTGGCTCTACCGTACATCACTCTTCATCATTGCTTGTA 640
Query 599 TCCTCTACCAAAACATCTGTCACCTCCAGGTCCTCCGTCTTGATGAATTCGCCCGTTGTT 658
||||||||||||||||||| |||||||||||||||||||||||||||||||| || || |
Sbjct 641 TCCTCTACCAAAACATCTGCCACCTCCAGGTCCTCCGTCTTGATGAATTCGCACGCTGCT 700
Query 659 TCGCCTCTGAGATCAAAGATTTTAGTTCCATACTCGCCGAGCATCTCAAAATCCGTCGTG 718
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 701 TCGCCTCTGAGATCAAAGATTTCAGTTCCATACTCGCCGAGCATCTCAAAATCCGTCGTG 760
Query 719 AACTGAAGATTGTTAGTCACCGTTTCAGGCGATTCATTCTTTTGTCATTGTTTTTCGTCA 778
||||||||||||| |||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 761 AACTGAAGATTGTCAGTCACCGGTTCAGACGATTCATTCTTTTGTCATTGTTTTTCGTCA 820
Query 779 CTGCCACTCAGTTCATGGCATTGCTTACCACCATCAGAGCTAGTGTTCCTTTTAATATCT 838
||||||||||||||||||||||||| || |||||||||||||||||||| ||||||||||
Sbjct 821 CTGCCACTCAGTTCATGGCATTGCTGACTACCATCAGAGCTAGTGTTCCCTTTAATATCT 880
Query 839 ACGAAGTTGGCGAACTCGCGTTATCCTCCATAAGCTTGGTATCAGGGCTATTCATATGCT 898
||||||||||||| |||||||||| ||||| ||||||||| ||||| |||||||||||||
Sbjct 881 ACGAAGTTGGCGAGCTCGCGTTATGCTCCACAAGCTTGGTGTCAGGACTATTCATATGCT 940
Query 899 TGAAAAGTGCAACGCAGATGACCCATAAAGCTCAATCTGTAACTAGCATCGCCACAAAGT 958
||||||||||||| || ||||| || ||||||||||| ||||| ||||||||||||||||
Sbjct 941 TGAAAAGTGCAACACAAATGACTCACAAAGCTCAATCAGTAACGAGCATCGCCACAAAGT 1000
Query 959 GGAACGTTTGCGCATCTTTAGATACATTTGATGTTCTTGATGACGGAGAGACTCCTAAAT 1018
||||||| ||||| |||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1001 GGAACGTGTGCGCGTCTTTAGATACATTTGATGTTCTTTATGACGGAGAGACTCCTAAAT 1060
Query 1019 GTCCAACGACCATACAACATTCCCAGATTTTATCGCGTCGTCGTAATGTTATCCAATCAT 1078
||||||| || | ||||||||||||||||||||||||||||||||||||| | ||||| |
Sbjct 1061 GTCCAACAACTACACAACATTCCCAGATTTTATCGCGTCGTCGTAATGTTGTTCAATCGT 1120
Query 1079 CTGACGACGATGAAGAAGGAGAAGGAGATCACAATGATCTTGATATACATCCAATCTTTG 1138
|||| || ||||||||||||||||||||| ||||||||||||| ||||||||||||||||
Sbjct 1121 CTGATGATGATGAAGAAGGAGAAGGAGATGACAATGATCTTGAGATACATCCAATCTTTG 1180
Query 1139 CCCGCGCCGTTTCTTCCCAGAAACGTCAAGCTCTAGTGACCTATCTAGAGAACAACAGAG 1198
|||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1181 CCCGCGCCATTTCTTCTCAGAAACGTCAAGCTCTAGTGACCTATCTAGAGAACAACAGAG 1240
Query 1199 CAGGGATCACAGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCA 1258
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1241 CAGGGATCACTGTTTACGGATTCTTGGTGGATAAAACATGGTTGCGTATGATCTTCAGCA 1300
Query 1259 TCGAACTTGCTCTTCTTCTATGGCTACTCAAAAAGACAATCGGTAATGTTATATGTTTCT 1318
||||||||||||||||||||||||| ||||||||||||||| ||||| ||||||||||||
Sbjct 1301 TCGAACTTGCTCTTCTTCTATGGCTGCTCAAAAAGACAATCAGTAATTTTATATGTTTCT 1360
Query 1319 ACTCTAAATCCATATTTTC 1337
||||| |||||||||||||
Sbjct 1361 ACTCTGAATCCATATTTTC 1379
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 67067928120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5