BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895509

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04330.1 | Symbols:  | Chaperonin-like RbcX protein | chr4:2...   806    0.0  


> AT4G04330.1 | Symbols:  | Chaperonin-like RbcX protein | chr4:2116553-2118597 
REVERSE LENGTH=706
Length=706

 Score =  806 bits (436),  Expect = 0.0
 Identities = 499/529 (94%), Gaps = 5/529 (1%)
 Strand=Plus/Plus

Query  1    ATGGAGTCATCTTCTTCCCTCATTCTCCATCACTCTTACCTCTCTTACCTTAATCCAAAA  60
            ||||||||||||||||| |||   || |||||||||||||||||||||||||||||||||
Sbjct  35   ATGGAGTCATCTTCTTCACTC---CTTCATCACTCTTACCTCTCTTACCTTAATCCAAAA  91

Query  61   TTTGGAAAAAGACCTTTGCTTTCTTTTGCATTAATGCGGAATTCGCGAAAATGTAAACAA  120
            |||||||||||||||||| |||||| | ||||||||| || |||||||||||| ||||||
Sbjct  92   TTTGGAAAAAGACCTTTGGTTTCTTATCCATTAATGCAGAGTTCGCGAAAATGCAAACAA  151

Query  121  ACTCGAATATGTTCTAACAAGATGTATGTTCCCGGCTTTGGAGAAGCTTCACCGGAGGCT  180
            ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  152  ACTCGCATTTGTTCTAACAAGATGTATGTTCCCGGCTTTGGAGAAGCTTCACCGGAGGCT  211

Query  181  AAAGCAGCGAAGCATCTTCATGACTTCTTTACTTACGTTGCAGTGAGGATAGTTTCTGCT  240
            || |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct  212  AAGGCAGCGAAGCATCTTCATGACTTCTTTACTTACGTTGCAGTGAGGATAGTGTCTGCT  271

Query  241  CAGCTTGAGAGTTATAACCCTGAGGCGTATATGGAGTTGAGAGAATTTTTAGACGCAAAC  300
            ||||||||||||||||| |||||||| ||||||||||||||||||||||||||  |||||
Sbjct  272  CAGCTTGAGAGTTATAATCCTGAGGCTTATATGGAGTTGAGAGAATTTTTAGATACAAAC  331

Query  301  TCTGTAAGTGACGGCGACAAATTTTGTGCCACTCTCATGCGTCGGTCTTCACGTCACATG  360
            |||||||||||||| || ||||| || ||||||||||||||||| |||||||||||||||
Sbjct  332  TCTGTAAGTGACGGTGATAAATTCTGCGCCACTCTCATGCGTCGCTCTTCACGTCACATG  391

Query  361  AACTTAGCCCTTCGAATTTTAGAGGTACGGTCTGCTTATTGTAAAAACGATTTCGAATGG  420
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  392  AACTTAGCCCTTCGAATTTTAGAGGTACGGTCTGCTTATTGTAAAAACGATTTCGAATGG  451

Query  421  GATAATTTGAAGCGCCTCGCCTTCAAGAACGTAGATGGAT-CCAACACAAGACTCATGCG  479
            |||||| |||||||||||||||||||||||||||||| || |||||||||||||||||||
Sbjct  452  GATAATATGAAGCGCCTCGCCTTCAAGAACGTAGATG-ATTCCAACACAAGACTCATGCG  510

Query  480  TGAATACGTCTTGGAGACTAGCCATGTCGAAACCGATTCCGATAAGTGA  528
             || ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  511  CGAGTACGTCTTGGAGACTAGCCATGTCGAAACCGATTCTGATAAGTGA  559



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25267775941


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5