BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895513

Length=315
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04360.1 | Symbols:  | Protein of unknown function (DUF1068)...   549    5e-156


> AT4G04360.1 | Symbols:  | Protein of unknown function (DUF1068) 
| chr4:2133139-2133935 REVERSE LENGTH=603
Length=603

 Score =  549 bits (297),  Expect = 5e-156
 Identities = 309/315 (98%), Gaps = 0/315 (0%)
 Strand=Plus/Plus

Query  1    ATGAGGCACGAGGAAGGGAGTGAAGAGAACGAGAGTAGTTTCACTGAAATGGTAGCTGAA  60
            |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct  286  ATGAGGCACGAGGAAGGGAGTGAAGAGAGCGAGAGTAGTTTTACTGAAATGGTAGCTGAA  345

Query  61   GAGCTGAAGCTAAGAGAAGCACAAGCTCAAGAAGACGAATGGCGTGCAGATAGGTTGCTG  120
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  346  GAGCTGAAGCTAAGAGAAGCACAAGCTCAAGAAGACGAATGGCGTGCAGATAGGTTGCTG  405

Query  121  CTAGATGCTAAGAAAGCGGCGTCTCAGTATCAGAAAGAGGCTGATAAATGCAGTATGGGG  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  406  CTAGATGCTAAGAAAGCGGCGTCTCAGTATCAGAAAGAGGCTGATAAATGCAGTATGGGG  465

Query  181  ATGGAAACATGTGAGCTAGCAAGAGAGAAAGCAGAGGCAACTCTAGATGAACAGAGAAGA  240
            ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct  466  ATGGAAACATGTGAGCTAGCAAGAGAGAAAGCAGAAGCAGCTCTAGATGAACAGAGAAGA  525

Query  241  CTATCTTACATGTGGGAGCTTCGAGCTCGGCAAAGAGGATGGAAAGAAGGAACTGTTGCT  300
            || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct  526  CTTTCTTACATGTGGGAGCTTCGAGCTCGGCAAGGAGGATGGAAAGAAGGAACTGTTGCT  585

Query  301  TCTGATGTTATCTAA  315
            |||||||||||||||
Sbjct  586  TCTGATGTTATCTAA  600



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 14627914959


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5