BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895515
Length=708
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04375.1 | Symbols: | pseudogene, hypothetical protein | ch... 435 4e-121
AT2G04920.1 | Symbols: | F-box and associated interaction doma... 58.4 9e-08
AT3G22730.1 | Symbols: | F-box and associated interaction doma... 54.7 1e-06
AT3G22350.1 | Symbols: | F-box and associated interaction doma... 52.8 4e-06
AT3G21120.1 | Symbols: | F-box and associated interaction doma... 52.8 4e-06
> AT4G04375.1 | Symbols: | pseudogene, hypothetical protein |
chr4:2136444-2137565 FORWARD LENGTH=1122
Length=1122
Score = 435 bits (235), Expect = 4e-121
Identities = 393/464 (85%), Gaps = 32/464 (7%)
Strand=Plus/Plus
Query 267 CTTAGTCAGTTTTGATTATACAAA-AGAGAGATTTGAACGTCTGGGTCTT-C--CGTGT- 321
|||||||||||||||||||| ||| |||||||||||||||| || ||||| | |||||
Sbjct 661 CTTAGTCAGTTTTGATTATA-AAACAGAGAGATTTGAACGTATGTGTCTTCCGTCGTGTC 719
Query 322 -C--A-C--C---G-T-GGAACTGCGGCTCTCTCCTTTGTTAGAGAAGAAAAACTTACCG 370
| | | | | | |||||| |||||||||| |||||| |||||||||||||| |
Sbjct 720 ACATAGCAACTATGTTGGGAACTTTGGCTCTCTCCGTTGTTAAAGAAGAAAAACTTATTG 779
Query 371 TGTTATTACATGACGCAAATACATCAAGGACAGAAATATGGGTGACAAATAAGATTGATG 430
|||||||||||| |||||||||||||| ||||||||||||| | ||||||||||||||||
Sbjct 780 TGTTATTACATGGCGCAAATACATCAAAGACAGAAATATGGCTAACAAATAAGATTGATG 839
Query 431 -GTACCAAAGTGGTGGCGTGGAGCATGGTCTTAGCAATGGATCACCCTGAACTTG-TTTT 488
| |||||||||||| |||||||||||||||||||||||||||||| ||| ||| | ||
Sbjct 840 AG-ACCAAAGTGGTGTCGTGGAGCATGGTCTTAGCAATGGATCACCTTGAGTTTGATATT 898
Query 489 TGGGTTTAGGGTAA-G-TT-TTTTGGTCGACGAGGAGAAGAGATGCGTTGTGTGTTGGGG 545
| ||| || |||| | || |||| | |||||||||||||||| || |||||||||
Sbjct 899 T-GGTCTAACGTAAGGCTTATTTT--T-GACGAGGAGAAGAGATTCGGTGTGTGTTGTAA 954
Query 546 TCAGAAACGTATGGTCAAGGATGGCAAGATTCACT-ACAAAGTCATGGTACACATAATTG 604
|| |||||||| ||||||| ||||||||||||||| || | ||| |||||||||||||
Sbjct 955 TCGGAAACGTAGGGTCAAGAATGGCAAGATTCACTGTGAATG-CATAGTACACATAATTG 1013
Query 605 ATGAGGATAATAAAGTTACAAAAGTGGATTTTGCACCATCTACAATGAGTTCATATCGGC 664
| |||||||||||||| |||||||||||||||||| |||||| | | | ||||||| ||
Sbjct 1014 AGGAGGATAATAAAGTGACAAAAGTGGATTTTGCAGCATCTA-AGT-TG-TCATATCTGC 1070
Query 665 CACTTTTGCTCAATTATGTTCCAAGTTTGGTTCAAATCCAGTGA 708
|||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1071 CACTTTTGTTCAATTATGTTCCAAGTTTGGTTCAAATCCAGTGA 1114
> AT2G04920.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr2:1726138-1727268 FORWARD LENGTH=1131
Length=1131
Score = 58.4 bits (31), Expect = 9e-08
Identities = 36/38 (95%), Gaps = 1/38 (3%)
Strand=Plus/Plus
Query 668 TTTTGCTCAATTATGTTCCAAGTTTGGTTCAAATCCAG 705
||||| ||| ||||||||||||||||||||||||||||
Sbjct 1050 TTTTG-TCAGTTATGTTCCAAGTTTGGTTCAAATCCAG 1086
> AT3G22730.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:8031341-8032459 REVERSE LENGTH=1119
Length=1119
Score = 54.7 bits (29), Expect = 1e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 674 TCAATTATGTTCCAAGTTTGGTTCAAATC 702
|||||||||||||||||||||||||||||
Sbjct 1061 TCAATTATGTTCCAAGTTTGGTTCAAATC 1089
> AT3G22350.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7901905-7903041 FORWARD LENGTH=1137
Length=1137
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 675 CAATTATGTTCCAAGTTTGGTTCAAATC 702
||||||||||||||||||||||||||||
Sbjct 1104 CAATTATGTTCCAAGTTTGGTTCAAATC 1131
> AT3G21120.1 | Symbols: | F-box and associated interaction domains-containing
protein | chr3:7406326-7407429 FORWARD LENGTH=1104
Length=1104
Score = 52.8 bits (28), Expect = 4e-06
Identities = 28/28 (100%), Gaps = 0/28 (0%)
Strand=Plus/Plus
Query 678 TTATGTTCCAAGTTTGGTTCAAATCCAG 705
||||||||||||||||||||||||||||
Sbjct 1065 TTATGTTCCAAGTTTGGTTCAAATCCAG 1092
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34309922401
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5