BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895533

Length=228
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT1G27150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like s...   254    3e-67


> AT1G27150.1 | Symbols:  | Tetratricopeptide repeat (TPR)-like 
superfamily protein | chr1:9429047-9432274 FORWARD LENGTH=1743
Length=1743

 Score =  254 bits (137),  Expect = 3e-67
 Identities = 159/169 (94%), Gaps = 4/169 (2%)
 Strand=Plus/Plus

Query  1    ATGGAAGAAGCTGCAGTAGCTTCCGA-AAAAGGCTATGAGATAAACAAAGAAGACGCCTG  59
            |||||||||||||| | ||||||| | |||||||||||||||||||||||||||||| ||
Sbjct  650  ATGGAAGAAGCTGCGGCAGCTTCC-AGAAAAGGCTATGAGATAAACAAAGAAGACGCTTG  708

Query  60   GGCACATCACTGTTTGTGTCATGTTCTTCAACATGAATGTCGGTTTAAAGAAGCAGTGGA  119
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  709  GGCACATCACTGTTTGTGTCATGTTCTTCAACATGAATGTCGGTTTAAAGAAGCAGTGGA  768

Query  120  GTTCATGGAAGCACTCGCAA-AATCTTGGCCTTCCTGCTCATCCTTCAT  167
            |||||||||||||||||||  || ||||||| || ||||||||||||||
Sbjct  769  GTTCATGGAAGCACTCGCAGGAA-CTTGGCCCTCTTGCTCATCCTTCAT  816



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10254620796


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5