BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895535
Length=669
Score E
Sequences producing significant alignments: (Bits) Value
AT5G06350.1 | Symbols: | ARM repeat superfamily protein | chr5... 124 8e-28
AT4G04680.1 | Symbols: | INVOLVED IN: biological_process unkno... 100 1e-20
AT2G07000.1 | Symbols: | unknown protein; Has 1 Blast hits to ... 69.4 4e-11
> AT5G06350.1 | Symbols: | ARM repeat superfamily protein | chr5:1938781-1944357
FORWARD LENGTH=2794
Length=2794
Score = 124 bits (67), Expect = 8e-28
Identities = 77/82 (94%), Gaps = 0/82 (0%)
Strand=Plus/Plus
Query 8 TTCACTCCAAGGCTCCTGCAAAGAAGCAGCAAAATAAACGAATTGCTTTCAAGAAAATTA 67
||| |||||||||||||||||||||||||||||| ||| |||||| ||||||||||||||
Sbjct 5 TTCGCTCCAAGGCTCCTGCAAAGAAGCAGCAAAAGAAAGGAATTGATTTCAAGAAAATTA 64
Query 68 AGAGAAAACTCGGGAGAAAATT 89
||||||| ||||||||||||||
Sbjct 65 AGAGAAAGCTCGGGAGAAAATT 86
> AT4G04680.1 | Symbols: | INVOLVED IN: biological_process unknown;
LOCATED IN: endomembrane system; BEST Arabidopsis thaliana
protein match is: ARM repeat superfamily protein (TAIR:AT5G06350.1);
Has 30201 Blast hits to 17322 proteins in 780
species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi
- 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996
(source: NCBI BLink). | chr4:2372266-2373327 FORWARD LENGTH=786
Length=786
Score = 100 bits (54), Expect = 1e-20
Identities = 62/66 (94%), Gaps = 0/66 (0%)
Strand=Plus/Plus
Query 153 GAAAGGCTTGACCCTCAATGATCTTCTGCAACAAACTTCACATTGCAATGCCAAACTTCG 212
||||||||||||| | || |||||||||| ||||||||||||||||||||||||||||||
Sbjct 132 GAAAGGCTTGACCTTGAAGGATCTTCTGCCACAAACTTCACATTGCAATGCCAAACTTCG 191
Query 213 CAAAGA 218
||||||
Sbjct 192 CAAAGA 197
> AT2G07000.1 | Symbols: | unknown protein; Has 1 Blast hits to
1 proteins in 1 species: Archae - 0; Bacteria - 0; Metazoa
- 0; Fungi - 0; Plants - 1; Viruses - 0; Other Eukaryotes -
0 (source: NCBI BLink). | chr2:2901870-2902290 REVERSE LENGTH=322
Length=322
Score = 69.4 bits (37), Expect = 4e-11
Identities = 39/40 (98%), Gaps = 0/40 (0%)
Strand=Plus/Minus
Query 424 GCTTATGAAGCTCAGACTCTTAAACTTCCACTCTTTCTTC 463
||||||||||| ||||||||||||||||||||||||||||
Sbjct 80 GCTTATGAAGCCCAGACTCTTAAACTTCCACTCTTTCTTC 41
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 32350790668
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5