BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895543
Length=1449
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04750.1 | Symbols: | Major facilitator superfamily protein... 2278 0.0
AT4G04760.1 | Symbols: | Major facilitator superfamily protein... 1253 0.0
> AT4G04750.1 | Symbols: | Major facilitator superfamily protein
| chr4:2417888-2422624 FORWARD LENGTH=1502
Length=1502
Score = 2278 bits (1233), Expect = 0.0
Identities = 1378/1450 (95%), Gaps = 2/1450 (0%)
Strand=Plus/Plus
Query 1 ATGGCGGAAGAATCTCTATTACTATCTCATACAGAAGTTTTATCAGATTCTCCTAATAAA 60
||||||||||||||| |||||| |||||||||||||| | |||||| |||||||||||||
Sbjct 54 ATGGCGGAAGAATCTTTATTACCATCTCATACAGAAGATGTATCAGCTTCTCCTAATAAA 113
Query 61 TCTTCTTCACTTCTGTCTGAAATATCAAATGCCTCCACGAGACCTTTTGTTCTTGCTTTC 120
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 114 TCTTCATCACTTCTGTCTGAAATATCAAATGCTTCCACGAGACCTTTTGTTCTTGCTTTC 173
Query 121 ACTGTCGGTTCTTGTGGTGCCTTGAGCTTTGGATGCATTGTTGGATATACAGCTCCTACA 180
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 174 ACTGTTGGTTCTTGTGGTGCCTTGAGCTTTGGATGCATTGTTGGATATACAGCTCCTACA 233
Query 181 CAGACCAGTATCATGAAAGACTTGAATCTATCCATAGCTGAtttttcattttttGGATCG 240
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 234 CAGTCCAGTATCATGAAAGACTTGAATCTATCCATAGCTGATTTTTCATTTTTTGGATCG 293
Query 241 ATATTGACGGTGGGGCTAATCGTTGGAGCATTAATTTGTGGGAAATTGGCAGATTTGGTT 300
|||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 294 ATATTGACAGTGGGGCTAATCCTTGGAGCATTAATTTGTGGGAAATTGGCAGATTTGGTT 353
Query 301 GGTCGTGTCTACACGATATGGATTACAAACATTCTCGTTTTAATCGGCTGGTTAGCTATT 360
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 354 GGTCGTGTCTATACGATATGGATTACAAACATTCTTGTTTTAATCGGCTGGTTAGCTATT 413
Query 361 GCATTTGCTAAGGATGTTTGGCTGCTCGATCTTGGAAGGTTATTGCAAGGGATCTCGGTC 420
|||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||||||
Sbjct 414 GCATTTGCCAAGGATGTTCGGCTACTCGATCTTGGAAGGTTATTGCAAGGGATCTCGGTC 473
Query 421 GGAATTAGCTCATATTTGGGACCTATTTACATCAGCGAGTTAGCACCAAGAAACTTGCGA 480
|||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||
Sbjct 474 GGAATTAGCTCATATTTGGGACCTATTTACATTAGCGAGTTAGCACCAAGAAATTTGCGA 533
Query 481 GGAGCTGCTTCTTCCTTGATGCAGTTATTCGTCGGTGTTGGTATATCGGTCTTTTATGCA 540
|||||||||||||| |||||||||||||| |||||||| ||| |||||| |||||||||
Sbjct 534 GGAGCTGCTTCTTCGTTGATGCAGTTATTTGTCGGTGTGGGTCTATCGGCCTTTTATGCT 593
Query 541 CTTGGAACCGTCGTTGCTTGGCGCAATTTAGCCATTTTAGGATCTATACCTTCTCTATTG 600
|| ||||| | |||||||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 594 CTCGGAACAGCCGTTGCTTGGCGCAGTTTAGCCATTTTAGGATCTATACCTTCTCTAGTG 653
Query 601 GTTCTGCCTCTTCTTTTCTTCGTCCCCGAATCTCCTAGATGGCTAGCTAAAGTTGGGAGG 660
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 654 GTTCTGCCTCTTCTTTTCTTCATCCCCGAATCTCCTAGATGGCTAGCTAAAGTTGGGAGG 713
Query 661 GAAAAGGAGGTTGAGGGGGTTTTATTAAGCTTGCGAGGAGCAAAGTCTGATGTCTCCGAT 720
|||||||||||||| ||||||||||||||||||||||||||||| |||||||| || |||
Sbjct 714 GAAAAGGAGGTTGAAGGGGTTTTATTAAGCTTGCGAGGAGCAAAATCTGATGTATCAGAT 773
Query 721 GAAGCAGCAGCGATATTAGAATACACAAAACATGTTGAACAACAAGACGTCGATAGCCGT 780
||||||||| ||||||||||||| ||||||||||| |||||||||||| ||||||||||
Sbjct 774 GAAGCAGCAACGATATTAGAATATACAAAACATGTCGAACAACAAGACATCGATAGCCGC 833
Query 781 GGTTTCTTCAAGTTGTTCCAGCGAAAATACGCGTTACCACTTACTATTGGAGTTGTTCTT 840
||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||
Sbjct 834 GGTTTCTTCAAGTTGTTCCAGCGAAAATACGCGTTGCCACTAACTATTGGAGTTGTCCTT 893
Query 841 ATATCTGTGCCTCAGCTTGGAGGTCTTAATGGTTATACTTTTTACACCGATACCATTTTC 900
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 ATATCTATGCCTCAGCTTGGAGGTCTTAATGGTTATACTTTTTACACCGATACCATTTTC 953
Query 901 ACCTCTACCGGTGTATCAAGTAACGTTGGATTCATATTGACATCTATTGTTCAGATGTTT 960
||||||||||||||||||||| || |||||||||||||||||||||||||||||||| |
Sbjct 954 ACCTCTACCGGTGTATCAAGTGACATTGGATTCATATTGACATCTATTGTTCAGATGACT 1013
Query 961 GGAGGCATTTTAGGTGTTTTGCTTATAGATATATCCGGAAGACGTTCTCTTTTACTGGTT 1020
|||||| ||||||||||||||||| | ||||||||||||||||||||||| ||||| ||
Sbjct 1014 GGAGGCGTTTTAGGTGTTTTGCTTGTGGATATATCCGGAAGACGTTCTCTCCTACTGTTT 1073
Query 1021 TCTCAAGCTGGAATGTTCTTGGGTTGTCTAGCAACAGCCATTTCATTCTTCTTGCAGAAG 1080
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 TCTCAAGCTGGAATGTTCTTGGGTTGTCTAGCAACAGCCATTTCATTCTTCTTGCAGAAG 1133
Query 1081 AACAATTGCTGGGAAAAAGGAACACCAATATTGGCTCTCATTAGTGTTATGGTGTATTTT 1140
|||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1134 AACAATTGCTGGGAAACAGGAACACCAATAATGGCTCTCATTAGTGTTATGGTGTATTTT 1193
Query 1141 GGATCATACGGATTAGGCATGGGACCAATACCGTGGATCATAGCATCAGAGATTTATCCA 1200
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 1194 GGATCATACGGATTAGGCATGGGACCAATACCATGGATCATAGCATCAGAGATTTACCCT 1253
Query 1201 GTAGACGTGAAAGGAGCAGCAGGAACAGTGTGTAACTTGACCACCTCTATAAGCTCATGG 1260
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 1254 GTAGACGTGAAAGGAGCAGCAGGAACAGTGTGTAACTTGGTCACCTCTATAAGCTCATGG 1313
Query 1261 CTCGTTACTTACTCTTTCAATTTCTTGCTTCAATGGAGTCCCACAGGAACATTTATGATG 1320
|||||||||||||| |||||||| ||||||||||||||| | |||||||| |||||||||
Sbjct 1314 CTCGTTACTTACTCCTTCAATTTTTTGCTTCAATGGAGTTCTACAGGAACGTTTATGATG 1373
Query 1321 TTTGCCACTGTGATGGGCCTTGGATTTGTGTTCACAGCCAAGCTTGTTCCAGAGACCAAA 1380
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TTTGCCACTGTGATGGGTCTTGGATTTGTGTTCACAGCCAAGCTTGTTCCAGAGACCAAA 1433
Query 1381 GGCAAATCTTTAGAGGAAATTCAGTCTG-TGTTTACTGATTCTCCTCCTGAAGATTCTAC 1439
|||||||||||||| |||||||| |||| | |||||||||||| || |||||||||||||
Sbjct 1434 GGCAAATCTTTAGAAGAAATTCAATCTGCT-TTTACTGATTCTACTTCTGAAGATTCTAC 1492
Query 1440 AATTTTCTAA 1449
||||||||||
Sbjct 1493 AATTTTCTAA 1502
> AT4G04760.1 | Symbols: | Major facilitator superfamily protein
| chr4:2424164-2427769 FORWARD LENGTH=1404
Length=1404
Score = 1253 bits (678), Expect = 0.0
Identities = 1006/1157 (87%), Gaps = 52/1157 (4%)
Strand=Plus/Plus
Query 316 ATATGGATTACAAACATTCTCGTTT-TAATCGGCTGGTTAGCTATTGCATTTGCTAAGGA 374
|||||||| |||||||| ||| ||| ||||||| ||||| |||||||||||||| ||||
Sbjct 277 ATATGGATCACAAACATCCTC-TTTGTAATCGGATGGTTCGCTATTGCATTTGCCAAGGG 335
Query 375 TGTTTGGCTGCTCGATCTTGGAAGGTTATTGCAAGGGATCTCGGTCGGAATTAGC-TCAT 433
|||||||||||| ||||| ||||||||| | |||||||||||| ||||||||||| | ||
Sbjct 336 TGTTTGGCTGCTTGATCTCGGAAGGTTACTACAAGGGATCTCGATCGGAATTAGCGT-AT 394
Query 434 ATTTGGGACCTA-TTTACATCAGCGAGTTAGCACCAAGAAACTTGCGAGGAGCTGCTTCT 492
|||||||||| | ||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 395 ATTTGGGACC-AGTTTACATCACCGAGATAGCACCAAGAAACTTGCGAGGAGCTGCTTCT 453
Query 493 TCCTT-GATGCAGTTATTCGTCGGTGTTGGTATATCGGTCTTTTATGCACTTGGAACCGT 551
||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||| |
Sbjct 454 TCCTTCGC-GCAGTTATTCGCCGGTGTTGGTATATCGGTCTTTTATGCACTTGGAACCAT 512
Query 552 CGTTGCTTGGCGCAATTTAGCCATTTTAGGATCTATACCTTCTCTATTGGTTCTGCCTCT 611
|||||| |||||||||||||||||||| |||| ||||||||||||| |||||||||||||
Sbjct 513 CGTTGCCTGGCGCAATTTAGCCATTTTGGGATGTATACCTTCTCTAATGGTTCTGCCTCT 572
Query 612 TCTTTTCTTCGTCCCCGAATCTCCTAGATGGCTAGCTAAAGTTGGGAGGGAAAAGGAGGT 671
|||||||||| ||||||||||||||||||||||||||||||| || || |||| ||| ||
Sbjct 573 TCTTTTCTTCATCCCCGAATCTCCTAGATGGCTAGCTAAAGTAGGAAGAGAAATGGAAGT 632
Query 672 TGAGGGGGTTTTATTAAGCTTGCGAGGAGCAAAGTCTGATGTCTCCGATGAAGCAGCAGC 731
||| | ||||| |||||| ||||||||| ||| |||||||| || |||||||||||||
Sbjct 633 TGAAGCAGTTTTGTTAAGCCTGCGAGGAGAAAAATCTGATGTATCAGATGAAGCAGCAGA 692
Query 732 GATATTAGAATACACAAAACATGTTGAACAACAA---GACGTCGAT-AGCCGTGGTTTCT 787
|||||||||||| ||| |||||||| |||||||| ||| ||||| | ||| |||||||
Sbjct 693 GATATTAGAATATACAGAACATGTTAAACAACAACAAGACATCGATGA-CCGCGGTTTCT 751
Query 788 TCAAGTTGTTCCAGCGAAAATACGCGTTAC-CACTTACTATTGGAGTTGTTCTTATATCT 846
||||| | || ||||||||||| || || | |||||||||||||||||||||||||| ||
Sbjct 752 TCAAGCTATTTCAGCGAAAATATGCATT-CTCACTTACTATTGGAGTTGTTCTTATAGCT 810
Query 847 GTGCCTCAGCTTGGAGGTCTTAATGGTTATACTTTTTACACCGA-TACCATTTTCACCTC 905
|||||||||||||||||||||| |||||| |||||||||| || | ||||||||| |||
Sbjct 811 TTGCCTCAGCTTGGAGGTCTTAACGGTTATTCTTTTTACACTGACT-CCATTTTCATCTC 869
Query 906 TACCGGTGTATCAAGTAACGTTGGATTCATAT-TGACATCTA-TTGTTCAGATGTTTGGA 963
|||||||||||| ||| || |||||||||||| | ||||| | |||||||||||||||||
Sbjct 870 TACCGGTGTATCGAGTGACTTTGGATTCATATCT-ACATC-AGTTGTTCAGATGTTTGGA 927
Query 964 GGCATTTTAGGTGTTTTGCTTATAGATATATCCGGAAGACGTTCTCTTTTACTGGTTTCT 1023
|||||||||||| | ||||| | ||| |||| |||||||||| ||| |
Sbjct 928 GGCATTTTAGGTACTGTGCTTGTTGATGTATCTGGAAGACGTT-TCT----C-------- 974
Query 1024 CAAGCTGGAATGTTCTTGGGTTGTCT-AGCAACAGCCATTTCATTCTTCTTGCAG--A-- 1078
||||||||||||||||||||||||| | || |||||||||||||||||||| || |
Sbjct 975 -AAGCTGGAATGTTCTTGGGTTGTCTTACCA-CAGCCATTTCATTCTTCTTGAAGGCATG 1032
Query 1079 -AGAA-CAATTGCTGGGAAAAAGGAACACCAATATTGGCTCTCATTAGTGTTATGGTGTA 1136
|||| || ||||||||||| |||||| || | ||||||||| ||||||||||||||||
Sbjct 1033 GAGAATCA-TTGCTGGGAAACAGGAACTCCTGTCTTGGCTCTCTTTAGTGTTATGGTGTA 1091
Query 1137 TTTTGGATCATACGGAT-TAGGCATGGGACCAATACCGTGGATCATAGCATCAGAGATTT 1195
||||||||||||||| | | || |||||| ||||||| ||||||||||||||||||||||
Sbjct 1092 TTTTGGATCATACGGTTCT-GGTATGGGATCAATACCATGGATCATAGCATCAGAGATTT 1150
Query 1196 ATCCAGTAGACGTGAAAGGAGCAGCAGGAACAGTGTGTAACTTGACCACCTCTATAAGCT 1255
|||||||||| || || |||||||| |||||| ||||||||||| || ||||||||||
Sbjct 1151 ATCCAGTAGATGTTAAGGGAGCAGCGGGAACAATGTGTAACTTGGTCAGCTCTATAAGCG 1210
Query 1256 CATGGCTCGTTACTTACTCTTTCAATTTCTTGCTTCAATGGAG-TCCCACAGGAACATTT 1314
||||||| ||| |||| || |||| || ||||||||||||||| ||| ||||||||||||
Sbjct 1211 CATGGCTTGTTGCTTATTCCTTCAGTTACTTGCTTCAATGGAGCTCC-ACAGGAACATTT 1269
Query 1315 ATGATGTTTGCCACTGTGA-TGGGCCTTGGATTTGTGTTCACAGCCAAGCTTGTTCCAGA 1373
||||||||||||| ||| ||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1270 CTGATGTTTGCCACAGTGGCTGG-CCTTGGATTTGTGTTCATAGCCAAGCTTGTTCCAGA 1328
Query 1374 GACCAAAGGCAAATCTTTAGAGGAAATTCAGTCTGTGTTT-ACTGATTCTCCTCCTGAAG 1432
|||||||||||||||| |||| || ||||| ||| | ||| ||||||||||||||| |||
Sbjct 1329 GACCAAAGGCAAATCTCTAGAAGAGATTCAATCTCT-TTTCACTGATTCTCCTCCTCAAG 1387
Query 1433 ATTCTACAATTTTCTAA 1449
|||||||||||||||||
Sbjct 1388 ATTCTACAATTTTCTAA 1404
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 71435375535
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5