BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895551
Length=2271
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04850.2 | Symbols: KEA3 | K+ efflux antiporter 3 | chr4:245... 3670 0.0
> AT4G04850.2 | Symbols: KEA3 | K+ efflux antiporter 3 | chr4:2452664-2457675
FORWARD LENGTH=3026
Length=3026
Score = 3670 bits (1987), Expect = 0.0
Identities = 2177/2268 (96%), Gaps = 16/2268 (1%)
Strand=Plus/Plus
Query 15 ACAACACAATGGTCGATTGAAGCATTGTGTTTTCACGGTGAAATCGAGTGTGCCTGTGTA 74
|||||| | || |||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 579 ACAACATAGTGTTCGATTAAAGCATTGCGTTTTCACGGTGAAATCGAGTGTGCCTGTGTA 638
Query 75 TTCGGAAGGCGTAAACGATGGGATTAAGTTGCATTCTTTTGGGAATTTAGTTAAAACAAG 134
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||
Sbjct 639 TTCGGAAGGCGTAAACGATGGGATTAAGTTGCATTCTTTTGGGAATTTAGTT-AAA-AAG 696
Query 135 AAGGTTTTTTCTGGATACTTC-GAGAAGGTTCTATTTCCAAGGTAGATGGTCTGAATTC- 192
|||| ||||||||||||| || || || |||||||||||||| |||||||||||| ||
Sbjct 697 AAGG-TTTTTCTGGATACCTCTAAG-AGATTCTATTTCCAAGGGAGATGGTCTGAA-TCG 753
Query 193 TCAGGGAGGAGAGTGCAGACTTATGCAGGAGTAGATGTAGCAAGTGCTGTTGATGTAATC 252
||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||
Sbjct 754 TCAGGGAGGAGAGTGGAGACTTATGCTGGAGTAGATGTAGCGAGTGCTGTTGATGTAATC 813
Query 253 AACGATCTTGGATTCGATACTTTGACCTTCTTGATGGTCACTGTTATTATTGTCCCTGCA 312
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 814 AACGATCTTGGATTCGATACTTTGACCTTCTTGATGGTTACTGTTATTATTGTCCCTGCA 873
Query 313 TTCAGAGTCCTCAAAGCTAGTCCGATACTTGGTTTCTTCTTTGCTGGTGTTGTACTCAAT 372
|||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 874 TTCAGAATTCTCAAAGCTAGTCCGATACTTGGTTTCTTCTTTGCTGGTGTTGTACTCAAC 933
Query 373 CAATTTGGTTTGATCAGAAATCTCACAGATGTTAAAGTTCTTTCGGAATGGGGGATTCTT 432
|||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 934 CAATTTGGTTTGATTAGAAATCTCACAGATGTTAAAGTTCTTTCAGAATGGGGGATTCTT 993
Query 433 TTCCTGCTCTTTGAGATGGGTCTAGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAA 492
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 994 TTCCTGCTCTTTGAGATGGGTCTCGAGCTTTCACTTGCTCGTCTGAAAGCTCTTGCAAAA 1053
Query 493 TTTGCTTTTGGCATGGGACTAACTCAGGTTTTGTTATGCACGGCTGCATTCACTGCTTTT 552
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1054 TTTGCTTTTGGCATGGGACTAACTCAGGTTTTGTTATGCACGGCTGCATTCACTGCTTTT 1113
Query 553 GAACTCCCACCAAATGGAGCCATCGGAACAAAAATTCTCGAATTCCTCTTTCATTCAAGG 612
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1114 GAACTCCCACCAAATGGAGCCATCGGAACAAAAATTCTGGAATTCCTCTTTCATTCAAGG 1173
Query 613 CCTGACTTGGTCAACATTAGAAGCATCGATGAGGCTGTTGTCATTGGCGCTGCTCTTTCA 672
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| |||
Sbjct 1174 CCTGACTTGGTCAACATTAGAAGCATTGATGAGGCCGTTGTCATTGGCGCTGCTCTATCA 1233
Query 673 TTGTCATCTTCAGCTTTTGTTCTCCAGCTTCTTGCAGAGAAAGGAGAGCTCCCTACAAGA 732
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1234 TTGTCATCTTCAGCTTTTGTTCTACAGCTTCTTGCAGAGAAAGGTGAGCTCCCTACAAGA 1293
Query 733 TTTGGCTCAGCAACCTTGGGAATTCTTCTTCTACAGGATATAGCTGTTGTACCGTTACTA 792
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1294 TTTGGCTCAGCAACCTTGGGAATTCTTCTTCTACAGGATATAGCTGTTGTGCCGTTACTA 1353
Query 793 GTCATTCTTCCGGTGTTGGAAAGCCAGAATATTGGTGGGGAAAGCATATGGCCAATGCTT 852
||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 1354 GTCATTCTTCCAGTGTTGGAAAGCCAGGATATTGGTGGGGAAAGCATATGGCCAATGCTT 1413
Query 853 GCAAAAGAAAGTGCAAAGGCTCTTGGTGGGTTGGGCATTCTCTCTCTTGGAGGAAAGTTC 912
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1414 GCAAAAGAAAGTGCAAAGGCTCTTGGTGGGTTGGGCATCCTCTCTCTTGGAGGAAAGTTC 1473
Query 913 TTTCTCCGTAGAATTTTCGAGGTTGTTGCAGAAACCAGAAGCTCGGAAGCTTTTGTGGCC 972
||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||
Sbjct 1474 TTTCTCCGTAGAATTTTCGAGGTTGTTGCAGAAACAAGAAGCTCAGAAGCTTTTGTGGCC 1533
Query 973 CTTTGCCTTCTCACAGTTGCTGGGACTTCACTTGTGACTCAATGGCTTGGTTTCAGTGAT 1032
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1534 CTTTGCCTTCTCACAGTTGCTGGGACTTCACTTGTGACTCAATGGCTTGGTTTCAGCGAT 1593
Query 1033 ACGCTTGGAGCTTTTCTTGCCGGAGCACTTCTAGCGGAAACAAATTTCCGGACACAAATC 1092
|||||||||||||||||||| |||||||||||||| |||||||||||||| ||||||||
Sbjct 1594 ACGCTTGGAGCTTTTCTTGCTGGAGCACTTCTAGCAGAAACAAATTTCCGAACACAAATT 1653
Query 1093 GAAGCTGATATAAGGCCATTTAGAGGTTTACTTCTTGGTTTGTTCTTTGTAACCACAGGA 1152
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1654 GAAGCTGATATTAGGCCATTTAGAGGTTTACTTCTCGGTTTGTTCTTTGTAACCACAGGA 1713
Query 1153 ACATCCATTGACATGGAGGTTCTGTTTCGTGAATGGCCTAATGTCCTCTCACTCTTGGGT 1212
|| |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1714 ACTTCCATTGACATGGAGGTTCTGTTTCGAGAATGGCCTAATGTCCTCTCACTCTTGGGT 1773
Query 1213 GGTCTGATTGTGATCAAAACACTTATCATAACCGCAATCGGTCCCCGAGTTGGCCTCACA 1272
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||
Sbjct 1774 GGTCTGATTGTGATCAAAACACTGATTATAACCGCAATCGGTCCCCGAGTTGGCCTCACA 1833
Query 1273 ATACAAGAAAGCGTAAGAGTTGGTTTTCTTCTTTCCCAGGGAGGGGAATTTGCATTTGTT 1332
||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||
Sbjct 1834 ATACAAGAAAGCGTAAGAGTTGGCTTTCTTCTTTCCCAGGGAGGAGAATTTGCATTTGTT 1893
Query 1333 GTGTTCTCTCTAGCCAACAGGCTAGGAGTGCTTCCAAATGAGCTGAACAAACTGCTCATT 1392
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1894 GTGTTCTCTCTAGCCAACAGGCTAGGAGTGCTTCCAAATGAGCTGAACAAACTGCTCATT 1953
Query 1393 ATCGTAGTTGTTTTGTCTATGGCATTAACACCTTATCTTAACCAACTTGGAAGAAAAGCC 1452
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1954 ATCGTAGTTGTTTTGTCTATGGCATTAACACCTTATCTTAACCAACTTGGAAGAAAAGCC 2013
Query 1453 TCCGATTTTCTTGATGAGAGACTTGATCCCGGAGAGAAAATAGATGAAAATGTGAACTTC 1512
|||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||
Sbjct 2014 GCCGATTTTCTTGATGAGAGACTTGATCCCGGAGAGAAAATAGGTGAAGATGTGAACTTC 2073
Query 1513 GACGTTAGTGAATCAATTGTCATCATTGGATTTGGACAAATGGGTCAGGTTCTGGCCAAT 1572
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2074 GATGTTAGTGAATCAATTGTCATCATTGGATTTGGACAAATGGGTCAGGTTCTGGCCAAT 2133
Query 1573 TTTTTGTCAACGCCGTTGGTCTCAGATAGTGATCTTGTGGGATGGCCTTATATTGGCTTT 1632
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2134 TTTTTGTCAACGCCATTGGTCTCAGATAGTGATCTTGTGGGATGGCCTTATATTGGTTTT 2193
Query 1633 GATCTGAATCCTGCTGTAGTGAAGGAATCAAGGAAACTCGGTTTCCCGATATTGTATGGA 1692
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2194 GATCTGAATCCTGCTGTAGTGAAGGAATCAAGGAAACTCGGTTTCCCGATATTGTATGGA 2253
Query 1693 GACGGATCTCGACCATCGGTTTTGCAATCTGCTGGTGTTTCATCTCCTAAAGCTATCATG 1752
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 2254 GACGGATCTCGACCATCGGTTTTGCAATCTGCAGGGGTTTCATCTCCTAAAGCTATCATG 2313
Query 1753 ATAATGTATAAAGGCAAGAAGAGAACTACAGAGGCTGTTCAAAGACTCCGCCTTGCCTTC 1812
|||||||||||||||||||||||||| || |||||||||||||||||||| |||||||||
Sbjct 2314 ATAATGTATAAAGGCAAGAAGAGAACCACTGAGGCTGTTCAAAGACTCCGTCTTGCCTTC 2373
Query 1813 CCGGGGAGTCCAATTTATGCAAGAGCTCAAGATTTACCGCATCTACTTGAACTAAAGAAA 1872
|| |||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||
Sbjct 2374 CCCGGGAGTCCTATTTACGCAAGAGCTCAAGATTTACCGCATCTCCTTGAACTAAAGAAA 2433
Query 1873 GCAGGAGCAACGGATGCAATTCTTGAAAATGCAGAGACAAGTTTACAGCTCGGCTCGAAG 1932
|||||||| || ||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 2434 GCAGGAGCCACAGATGCAATTCTCGAAAATGCAGAGACAAGTTTACAGCTCGGTTCGAAG 2493
Query 1933 CTGTTGACAGGATTTGGAGTAATGTCTGACGACGTAAGCTTTCTGAGTAAAGTTTTCAGA 1992
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 2494 CTGTTGACAGGATTTGGAGTAATGTCTGACGACGTAAGCTTTCTAAGTAAAGTTTTCAGA 2553
Query 1993 GATTCAATGGAGATACAAGCTCAAGAAGAAATCACTGCTAGTGAAACCAATGCTGGTTTG 2052
||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||
Sbjct 2554 GATTCAATGGAGATACAAGCTCAAGAAGAAATCACAGCTAGTGAAACAAATGCTGGTTTG 2613
Query 2053 AAGCCAATGCAGATGAAAGCTTCTGATATAAACGTAGAGTCTGGTGCA-CA-A----CAA 2106
||||||||||| |||||||| |||||||||||||||| ||||| |||| || | |||
Sbjct 2614 AAGCCAATGCAAATGAAAGCATCTGATATAAACGTAGTGTCTGCTGCAACACAAAAACAA 2673
Query 2107 GTCCAGCTCATGAAGCCAATGCAAATGAAAGCTTCTGATTCAAACTCAGATTCTGCAGCA 2166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2674 GTCCAGCTCATGAAGCCAATGCAAATGAAAGCTTCTGATTCAAACTCAGATTCTGCAGCA 2733
Query 2167 GAAATTCTTCAAGAAACAGATAGTTTGAGTCAGTCTC---AGATTGATGATTCTTCTGTG 2223
|| |||||||||||||||| | ||||||||||| ||| ||||||||||||||||||||
Sbjct 2734 GAGATTCTTCAAGAAACAGCTGGTTTGAGTCAGCCTCCTGAGATTGATGATTCTTCTGTG 2793
Query 2224 AATATAGATAATGGATTTGTTGGTAAAGCTGATAAAGCTCAAGAGTAA 2271
|||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 2794 AATATAGATAATGGATTTGTTGGTAAAGCTGATAAAGCTCAAGATTAA 2841
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 112700223525
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5