BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895553
Length=1023
Score E
Sequences producing significant alignments: (Bits) Value
AT4G04870.1 | Symbols: CLS | cardiolipin synthase | chr4:246167... 1504 0.0
> AT4G04870.1 | Symbols: CLS | cardiolipin synthase | chr4:2461674-2464143
REVERSE LENGTH=1395
Length=1395
Score = 1504 bits (814), Expect = 0.0
Identities = 966/1036 (93%), Gaps = 23/1036 (2%)
Strand=Plus/Plus
Query 1 ATGGCGATTTACAGATCTCTGAGAAAGCTAATTGAAATCAATCACCGGAAAACTAGACCA 60
|||||||||||||||||||| ||||||||| |||||||||||||||||||||| ||||||
Sbjct 140 ATGGCGATTTACAGATCTCTAAGAAAGCTAGTTGAAATCAATCACCGGAAAACAAGACCA 199
Query 61 TTCTTCACCGCCGCCACCGCCGCATCGCCTTCCGGCGGAACCGTTTCTCTTATC-CCACC 119
|||||||||||||| | || | |||||||||||||||||||||| | | |||||
Sbjct 200 TTCTTCACCGCCGCTA------CA--G-CTTCCGGCGGAACCGTTTCTCTGA-CTCCACC 249
Query 120 GCAGTTTTCGCCGTTGTTCCCACATTTCTCACAGCGTTTATCTCCGCTTTCGAAATGGTT 179
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 250 GCAGTTTTCGCCGTTGTTCCCACATTTCTCACACCGTTTATCTCCGCTTTCGAAATGGTT 309
Query 180 CGTTCCTCTTCATGGACCTCTCTTCCTCTCTTCTCCTCCTTGGAAACTTCTCCAGTCTGC 239
|||||||||| |||||||||||||| | ||||||||||||||||||||||||||||||||
Sbjct 310 CGTTCCTCTTAATGGACCTCTCTTCTTATCTTCTCCTCCTTGGAAACTTCTCCAGTCTGC 369
Query 240 GACACCTTTGCATTGGCGCGGAAATGGCGCTATTTTGAAGAAGGTCGAAGCTCTGAATCT 299
|||||||||||| ||||||||||| ||| || ||||||| || |||||||||||||||||
Sbjct 370 GACACCTTTGCACTGGCGCGGAAACGGCTCTGTTTTGAAAAAAGTCGAAGCTCTGAATCT 429
Query 300 TAGATTGGATCGAATTAGAAGTAGAACTAGGTTTCCTAGACATTTAGGGTTACAGTCTGT 359
||||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||||
Sbjct 430 TAGATTGGATCGAATTAGAAGCAGAACTAGGTTTCCGAGACAGTTAGGGTTACAGTCTGT 489
Query 360 GGTA-C---C--A---ACGGTGGATCGCAACGATTCGAAGGAAGAAGATGGTGG--AA-T 407
|||| | | | |||||||||||||||||||| ||||||||||||||||| || |
Sbjct 490 GGTACCAAACATATTGACGGTGGATCGCAACGATTCCAAGGAAGAAGATGGTGGAAAATT 549
Query 408 ACTTAAGAGTTTTGTTAATGTCCCTAATTTGATATCAATGGCAAGATTAGTGTCTGGTCC 467
| | ||||||||||||||||| || ||| ||||||||||||| |||||||| ||||||||
Sbjct 550 AGTCAAGAGTTTTGTTAATGTGCCGAATATGATATCAATGGCGAGATTAGTATCTGGTCC 609
Query 468 TGCGCTTTGGTGGATGATTTCGAATGAGATGTATACTTCTGCTTTCGTAGGCTTGACTGT 527
|| ||||||||||||||| ||||||||||||||| ||||||||||| |||| ||| ||||
Sbjct 610 TGTGCTTTGGTGGATGATCTCGAATGAGATGTATTCTTCTGCTTTCTTAGGGTTGGCTGT 669
Query 528 TTCTGGAGCTAGTGATTGGTTAGATGGTTACATGGCTCGGAGGATGAAGATTAATTCTGT 587
||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||
Sbjct 670 TTCTGGAGCTAGTGATTGGTTAGATGGTTACGTGGCTCGGAGGATGAAGATTAACTCTGT 729
Query 588 GGTTGGCTCTTACCTTGATCCTCTTGCAGACAAGGTTCTTATCGGGTGTGTCGCAGTAGC 647
||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 730 GGTTGGCTCGTACCTTGATCCTCTTGCAGACAAGGTTCTTATCGGGTGTGTAGCAGTAGC 789
Query 648 AATGGTGCAGAAGGATCTCTTACATCCTGGACTGGTTGGAATTGTGTTGTTACGGGATGT 707
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 790 AATGGTGCAGAAGGATCTCTTACATCCTGGACTGGTTGGAATTGTGTTGTTACGGGATGT 849
Query 708 TGCACTCGTTGGTGGTGCAGTTTACCTAAGGGCATTAAACTTGGACTGGAAGTGGAAAAA 767
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 850 TGCACTCGTTGGTGGTGCAGTTTACCTAAGGGCACTAAACTTGGACTGGAAGTGGAAAAC 909
Query 768 TTGGAGTGACTTCTTCAACCTCGATGGTTCAAGCCCTCAGAAAGTAGAGCCATTGTTTAT 827
|||||||||||||||||| || ||||||||||| |||||||||||||| |||||||||||
Sbjct 910 TTGGAGTGACTTCTTCAATCTAGATGGTTCAAGTCCTCAGAAAGTAGAACCATTGTTTAT 969
Query 828 AAGCAAGGTGAATACAGTTTTCCAGTTGGCTCTAGTCGCTGGTGCAATACTTCAACCCGA 887
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||
Sbjct 970 AAGCAAGGTGAATACAGTTTTCCAGTTGACTCTAGTCGCTGGTGCAATACTTCAACCAGA 1029
Query 888 GTTTGGGAATCCAGATACCCAGACATGGATCACTTATCTAAGCTGGTTAGTTGCTTCGAC 947
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1030 GTTTGGGAATCCAGACACCCAGACATGGATCACTTATCTAAGCTGGTTAGTTGCTTCGAC 1089
Query 948 GACTATGGCTTCAACTGCAGCTTATGGGGTACAATACTGGAAGAAGAGACCTATCTCTAT 1007
||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1090 GACTATGGCTTCAACTGCAGCTTATGGTGTACAATACTGGAAGAAGAGACCTATATCTAT 1149
Query 1008 GATTAAGAGATCATAG 1023
||||||||||||||||
Sbjct 1150 GATTAAGAGATCATAG 1165
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50133678706
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5