BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895570

Length=636
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G21660.2 | Symbols:  | proline-rich spliceosome-associated (...   449    1e-125


> AT4G21660.2 | Symbols:  | proline-rich spliceosome-associated 
(PSP) family protein | chr4:11506014-11509842 REVERSE LENGTH=2112
Length=2112

 Score =  449 bits (243),  Expect = 1e-125
 Identities = 311/344 (90%), Gaps = 4/344 (1%)
 Strand=Plus/Plus

Query  1     GCTTACATTGAGAAAGAAGATGGTAAGAAATTAAAGCAAAAGCAATGTGAGCGTATGCAA  60
             |||||||||||||||||||||||||||||||| |||||||||||| | ||| | ||||||
Sbjct  836   GCTTACATTGAGAAAGAAGATGGTAAGAAATTGAAGCAAAAGCAACGGGAGAGAATGCAA  895

Query  61    CCAAAGATGGGAAAGATGGACATTGACTATCAGGTCCTTCATGATGCCTTCTTT-AAGTA  119
             ||||| ||||||||||||||||||||||| ||||| ||||||||||| || ||| || ||
Sbjct  896   CCAAAAATGGGAAAGATGGACATTGACTACCAGGTACTTCATGATGCATT-TTTCAAATA  954

Query  120   CCAAACAAAGCCTAAGCTGACATCTCTTGGCGAACTGTATTTTGAAGGGAAAGGATTCGA  179
             ||||||||||||||||||| || |||| |||||  |||||||||||||||||| ||| ||
Sbjct  955   CCAAACAAAGCCTAAGCTGTCAGCTCTAGGCGATTTGTATTTTGAAGGGAAAGAATTTGA  1014

Query  180   GGTTAAGCTGAGGGAAACGAAACCAGGAACTTTGTCACATGACCTAAAAGAAGCTCTTGG  239
             |||||| ||||||||||||||||||||   ||||||| | ||| ||||||||||||||||
Sbjct  1015  GGTTAAACTGAGGGAAACGAAACCAGGGTTTTTGTCAAACGACTTAAAAGAAGCTCTTGG  1074

Query  240   TATGCCTGAAG-CTGCTCCTCCCCCATGGCTAATTAATATGCAGAGATATGGTCCGCCTC  298
             ||||||||||| | ||||||||||||||||| ||||| ||||||||||||||||||||||
Sbjct  1075  TATGCCTGAAGGC-GCTCCTCCCCCATGGCTGATTAACATGCAGAGATATGGTCCGCCTC  1133

Query  299   CGTCCTACCCACATCTGAAAATTCCTGGTTTAAATGCTCCTATT  342
             | || |||||||||||||||||||||||||| ||||||||||||
Sbjct  1134  CTTCTTACCCACATCTGAAAATTCCTGGTTTGAATGCTCCTATT  1177



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 30693063817


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5