BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg895570 Length=636 Score E Sequences producing significant alignments: (Bits) Value AT4G21660.2 | Symbols: | proline-rich spliceosome-associated (... 449 1e-125 > AT4G21660.2 | Symbols: | proline-rich spliceosome-associated (PSP) family protein | chr4:11506014-11509842 REVERSE LENGTH=2112 Length=2112 Score = 449 bits (243), Expect = 1e-125 Identities = 311/344 (90%), Gaps = 4/344 (1%) Strand=Plus/Plus Query 1 GCTTACATTGAGAAAGAAGATGGTAAGAAATTAAAGCAAAAGCAATGTGAGCGTATGCAA 60 |||||||||||||||||||||||||||||||| |||||||||||| | ||| | |||||| Sbjct 836 GCTTACATTGAGAAAGAAGATGGTAAGAAATTGAAGCAAAAGCAACGGGAGAGAATGCAA 895 Query 61 CCAAAGATGGGAAAGATGGACATTGACTATCAGGTCCTTCATGATGCCTTCTTT-AAGTA 119 ||||| ||||||||||||||||||||||| ||||| ||||||||||| || ||| || || Sbjct 896 CCAAAAATGGGAAAGATGGACATTGACTACCAGGTACTTCATGATGCATT-TTTCAAATA 954 Query 120 CCAAACAAAGCCTAAGCTGACATCTCTTGGCGAACTGTATTTTGAAGGGAAAGGATTCGA 179 ||||||||||||||||||| || |||| ||||| |||||||||||||||||| ||| || Sbjct 955 CCAAACAAAGCCTAAGCTGTCAGCTCTAGGCGATTTGTATTTTGAAGGGAAAGAATTTGA 1014 Query 180 GGTTAAGCTGAGGGAAACGAAACCAGGAACTTTGTCACATGACCTAAAAGAAGCTCTTGG 239 |||||| |||||||||||||||||||| ||||||| | ||| |||||||||||||||| Sbjct 1015 GGTTAAACTGAGGGAAACGAAACCAGGGTTTTTGTCAAACGACTTAAAAGAAGCTCTTGG 1074 Query 240 TATGCCTGAAG-CTGCTCCTCCCCCATGGCTAATTAATATGCAGAGATATGGTCCGCCTC 298 ||||||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||| Sbjct 1075 TATGCCTGAAGGC-GCTCCTCCCCCATGGCTGATTAACATGCAGAGATATGGTCCGCCTC 1133 Query 299 CGTCCTACCCACATCTGAAAATTCCTGGTTTAAATGCTCCTATT 342 | || |||||||||||||||||||||||||| |||||||||||| Sbjct 1134 CTTCTTACCCACATCTGAAAATTCCTGGTTTGAATGCTCCTATT 1177 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 30693063817 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5