BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895572

Length=453
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G04980.1 | Symbols:  | unknown protein; BEST Arabidopsis tha...   654    0.0  


> AT4G04980.1 | Symbols:  | unknown protein; BEST Arabidopsis thaliana 
protein match is: unknown protein (TAIR:AT1G11070.1); 
Has 23100 Blast hits to 15699 proteins in 1063 species: Archae 
- 116; Bacteria - 2262; Metazoa - 8308; Fungi - 3268; Plants 
- 3181; Viruses - 958; Other Eukaryotes - 5007 (source: 
NCBI BLink). | chr4:2544210-2547999 REVERSE LENGTH=2749
Length=2749

 Score =  654 bits (354),  Expect = 0.0
 Identities = 425/458 (93%), Gaps = 10/458 (2%)
 Strand=Plus/Plus

Query  1    ATGTCAAGCGGGAGGCTTTGCGGCTTCACGCCGATAACCTTCTGTCGCAAGATCTCAAGA  60
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  107  ATGTCAAGCGGGAGGCTTTGCGGCTTCACGCCGATAACCTTCTGTCGCAAAATCTCAAGA  166

Query  61   TTGCAGGTCGCAAGAGGACTTGCTCTAAAAAGGCTTATCAAGGGAAAACACGAATTTAGA  120
            ||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||
Sbjct  167  TTGCAGGTCGCAAGAGGGCTTGCTCTAAAAAGGCTTATCAAAGGAAAACACGATTTTAGA  226

Query  121  CGCGCATCAACATCAAAGAAGAACAATGTCGaaaaaaagaaaaaTAAAGAGATCAAACGC  180
            ||| || |||||||||||||   |||||||||||||||||||||||||||||||| ||||
Sbjct  227  CGCACAACAACATCAAAGAA---CAATGTCGAAAAAAAGAAAAATAAAGAGATCAGACGC  283

Query  181  ACAGTTTCACAAATCTCTTCTTCTGTTGCACAAGCTTCT-C-C-AAAGAGTTTCAATTCT  237
            ||||||||||| ||||||||||||||||||||||||||| | | ||||||||||||||||
Sbjct  284  ACAGTTTCACAGATCTCTTCTTCTGTTGCACAAGCTTCTTCTCCAAAGAGTTTCAATTCT  343

Query  238  ACAAAACATGTTTCTACTCCC-CGTGCTACCGCGTCTCCTTTGTCAGTAAAGAA-TGGAA  295
            ||||||||||||||||||||| |  || |||||||||||||||||||||||||| |  ||
Sbjct  344  ACAAAACATGTTTCTACTCCCACC-GCGACCGCGTCTCCTTTGTCAGTAAAGAACTC-AA  401

Query  296  AGAAGAAAGCCAATACACCGAAAAAGAACACTTTGGAGGGTTCTTCGCCGAAATGTTCAG  355
            ||| |||||| |||||||| | ||||||||||||||||||||||||||||||||| ||||
Sbjct  402  AGACGAAAGCGAATACACCTAGAAAGAACACTTTGGAGGGTTCTTCGCCGAAATGCTCAG  461

Query  356  CAAATTTCATTTTGATGGTGGAATTAAGGAAGAACATCTTTGCTTTTAGAGATATGATTG  415
            ||||||||||||||||||| || |||||||| ||||| || |||||||||||||||||||
Sbjct  462  CAAATTTCATTTTGATGGTTGAGTTAAGGAAAAACATATTCGCTTTTAGAGATATGATTG  521

Query  416  ATTTACCTTCTCTTGATGGCTCTTTATCTGTCACCGAG  453
            ||||||||||||||||||| ||| ||||||||||||||
Sbjct  522  ATTTACCTTCTCTTGATGGTTCTCTATCTGTCACCGAG  559



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 21564864321


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5