BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895579
Length=216
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05030.1 | Symbols: | Copper transport protein family | chr... 355 8e-98
> AT4G05030.1 | Symbols: | Copper transport protein family | chr4:2576790-2577974
REVERSE LENGTH=333
Length=333
Score = 355 bits (192), Expect = 8e-98
Identities = 209/217 (96%), Gaps = 2/217 (1%)
Strand=Plus/Plus
Query 1 ATGTCGGTAAGTATGAGGTGCGAAAAATGTCGATCAGAAGCTCTCAAGATCGGAGCCAAA 60
||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||
Sbjct 118 ATGTCGGTAAGTATGAGGTGCGACAAATGTCGTTCAGAAGCCCTCAAGATCGGAGCCAAA 177
Query 61 ACTACTGGGGTGAC-TTTCGTGGGAATAGAAGGAGAAGAGAAAGACAAAGTGGTGGTGAT 119
|| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 178 ACCACTGGAGTGACGTTT-GTGGGAATAGAAGGAGAAGAGAAAGACAAAGTGGTGGTGAT 236
Query 120 CGGAGAAGGTGTCGACGCTGCATGTTTAGTTGTCCGGCTTCGCAAGAAAGTTGGTTTCGC 179
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 237 CGGAGAAGGTGTCGACGCCGCATGTTTAGTTGTCCGGCTTCGCAAGAAAGTTGGTTTCGC 296
Query 180 TGATATTATCAGCGTCACAGATGTTGACGACACTTAA 216
|||||||||||||||||||||||||||||||||||||
Sbjct 297 TGATATTATCAGCGTCACAGATGTTGACGACACTTAA 333
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 9651407808
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5