BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895588
Length=1029
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05100.1 | Symbols: AtMYB74, MYB74 | myb domain protein 74 |... 1352 0.0
AT5G26660.1 | Symbols: ATMYB86, MYB86 | myb domain protein 86 |... 91.6 1e-17
> AT4G05100.1 | Symbols: AtMYB74, MYB74 | myb domain protein 74
| chr4:2618454-2619887 FORWARD LENGTH=1175
Length=1175
Score = 1352 bits (732), Expect = 0.0
Identities = 943/1038 (91%), Gaps = 42/1038 (4%)
Strand=Plus/Plus
Query 1 ATGGGAAGATCACCATGTTGTGAGAAGAAGAATGGTCTCAAGAAAGGACCATGGACTCCT 60
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 104 ATGGGACGATCACCATGTTGTGAGAAGAAGAATGGTCTCAAGAAAGGACCATGGACTCCT 163
Query 61 GAGGAAGATCAAAAGCTCATTGATTATATCAATAAACATGGTTATGGAAATTGGAGAACT 120
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 164 GAGGAGGATCAAAAGCTCATTGATTATATCAATATACATGGTTATGGAAATTGGAGAACT 223
Query 121 CTTCCAAAGAATGCTGGGTTACAAAGATGTGGTAAGAGTTGTCGTCTCCGATGGACCAAC 180
||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 224 CTTCCCAAGAATGCTGGGTTACAAAGATGTGGTAAGAGTTGTCGTCTCCGGTGGACCAAC 283
Query 181 TATCTCCGACCAGATATTAAGCGTGGACGATTCTCTTTCGAAGAAGAAGAAACCATTATT 240
||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 284 TATCTCCGACCAGATATTAAGCGTGGAAGATTCTCTTTTGAAGAAGAAGAAACCATTATT 343
Query 241 CAACTTCACAGCATCATGGGAAACAAGTGGTCTGCTATTGCGGCTCGTTTGCCAGGAAGA 300
||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||
Sbjct 344 CAACTTCACAGCATCATGGGAAACAAGTGGTCTGCGATTGCGGCTCGTTTGCCTGGAAGA 403
Query 301 ACAGACAACGAGATCAAAAACTATTGGAACACTCACATCAGAAAAAGACTTCTAAAGATG 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 404 ACAGACAACGAGATCAAAAACTATTGGAACACTCACATCAGAAAAAGACTTCTAAAGATG 463
Query 361 GGAATCGACCCGGTAACACACACTCCACGTCTTGATCTTCTTGATATCTCCTCCATTCTC 420
|||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 464 GGAATCGACCCGGTTACACACACTCCACGTCTTGATCTTCTCGATATCTCCTCCATTCTC 523
Query 421 AGCTCATCTATCTACAACTCTACGcatcatcatcatcatca--A-CA------TATGAAC 471
||||||||||||||||||||| ||||||||||||||||||| | || |||||||
Sbjct 524 AGCTCATCTATCTACAACTCTTCGCATCATCATCATCATCATCATCAACAACATATGAAC 583
Query 472 ATGTCGAGGCTAATGATGGGTGATGGTCATCATCAACCATTGGTTAACCCCGAGATACTC 531
||||||||||| |||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct 584 ATGTCGAGGCTCATGATGAGTGATGGTAATCATCAACCATTGGTTAACCCCGAGATACTC 643
Query 532 AAACTCGCAACCTCTCTCTTTTCAAACCAAACCCATCCCAACAAAACACACGAGAACCAT 591
||||||||||||||||||||||||||||||| ||| |||||||| |||||||||||| |
Sbjct 644 AAACTCGCAACCTCTCTCTTTTCAAACCAAAACCACCCCAACAACACACACGAGAACAAC 703
Query 592 ACGGTTAACCAAACCGAAGTAAAACAATACCAAACCGGTTACAACATGACTGGTAATCAA 651
||||||||||||||||||||||| |||||||||||||||||||||||| |||||||| ||
Sbjct 704 ACGGTTAACCAAACCGAAGTAAACCAATACCAAACCGGTTACAACATGCCTGGTAATGAA 763
Query 652 GAATTACAATCTTGGTTCCCTATCATGGATCAGTTCGCGGAGTTCCAAGACCTCATGCCA 711
|||||||||||||||||||||||||||||||| ||| || | ||||||||||||||||||
Sbjct 764 GAATTACAATCTTGGTTCCCTATCATGGATCAATTCACGAATTTCCAAGACCTCATGCCA 823
Query 712 ATGAAAACGACGGTCCAAGATTCACTGCCTTCTTTCCCATCAAACCACGAAGACGAGTAT 771
||||| |||||||||||| ||||| || | | || | | || || || | |
Sbjct 824 ATGAAGACGACGGTCCAAAATTCATTG--T-C------AT-A--C---GATGATGATTGT 868
Query 772 TCCAAGTCTAACTCTGTATTAGAACCTTATTACTCGGACTTTGCCTCGGTCTTGACCACA 831
|| ||||| || | ||||||||||||||||||||| |||||||| || ||||||||||||
Sbjct 869 TCGAAGTCCAATTTTGTATTAGAACCTTATTACTCCGACTTTGCTTCAGTCTTGACCACA 928
Query 832 CCTTCTTCAAGCCCGACTCCATTGAACTCAAGTTCCACAACTTACATCAATAGTAGCACT 891
|||||||||||||||||||| || |||||||||||| |||||||||||||||||||||||
Sbjct 929 CCTTCTTCAAGCCCGACTCCGTTAAACTCAAGTTCCTCAACTTACATCAATAGTAGCACT 988
Query 892 TGCAGCACCGAGGATGAAAAAGAGAGTTATTACAGTAATAATGTTATGAGTACTTATGAA 951
|||||||||||||||||||||||||||||||||||| ||||| || | || | |
Sbjct 989 TGCAGCACCGAGGATGAAAAAGAGAGTTATTACAGTGATAAT---ATCA---CT-A--A- 1038
Query 952 ATTGCTGATTATTCGTTTGATGTTGATGGTTTTCTGCAATTCCAAGAAACAAAAAACAAT 1011
|| ||| ||||||||||| |||||||||| ||||||||| |||||||| | ||
Sbjct 1039 -TT----ATT---CGTTTGATGTTAATGGTTTTCTCCAATTCCAATAAACAAAACGCCAT 1090
Query 1012 TGGGATAGAGTTATGTAA 1029
||| ||||||||||||||
Sbjct 1091 TGGAATAGAGTTATGTAA 1108
> AT5G26660.1 | Symbols: ATMYB86, MYB86 | myb domain protein 86
| chr5:9331573-9333174 REVERSE LENGTH=1391
Length=1391
Score = 91.6 bits (49), Expect = 1e-17
Identities = 252/345 (73%), Gaps = 33/345 (10%)
Strand=Plus/Plus
Query 1 ATGGGAAGATCA-CCATGTTGTGAGAAGAAGAATGGTCTCAAG-AAAGGACC-ATGGACT 57
||||||||| || | |||||| ||| |||| | || ||| ||||| || ||| ||
Sbjct 131 ATGGGAAGA-CATTCTTGTTGTTTTAAGCAGAA--G-CT-AAGAAAAGG-CCTTTGGTCT 184
Query 58 CCTGAGGAAGATCA-AAAGC-TCATTGATTATATCAATAAACATGGTTATGGAAATTGGA 115
||||| |||||| | ||| | || | |||| |||| || ||||||| |||| |||||
Sbjct 185 CCTGAAGAAGATGAGAAA-CTTC-TCAATTACATCACTAGACATGGTCATGGCTGTTGGA 242
Query 116 GAACTCTTCCAAAGAAT-GCTGGGTTACAAAGATGTGGTAAGAGTTGTCGTCTCCGATGG 174
| || | || || | | || || || ||||||||||| ||||||||| | || | |||
Sbjct 243 GTTCTGTCCCTAA-ACTCGCAGGTTTGCAAAGATGTGGAAAGAGTTGTAGACTTAGGTGG 301
Query 175 ACCAACTATCTCCGACCAGATATT-AAGCGTGGACGATTCTCTTTCGAAGAAGAAGAAA- 232
| || ||| | |||||||| || ||| | ||| | || ||| || |||| |||||||
Sbjct 302 ATAAATTATTTGAGACCAGAT-TTAAAGAGAGGA-GCTT-TCTCTC-AAGACGAAGAAAG 357
Query 233 C--CATTATTCAACTTCACA-GCAT-CA-TGGGAAACAAG-TGGTCTGC-TATTGCGGCT 285
| || ||| | | || || || | || | || ||| || |||||| | || || |
Sbjct 358 CTTGATCATTGAGC-TC-CATGC-TGCATTAGGCAAC-AGATGGTCT-CAAATCGCAACG 412
Query 286 CGTTTGCCAGGAAGAACAGACAACGAGATCAAAAACTATTGGAAC 330
|| || || |||||||||||||||||||||||||||| |||||||
Sbjct 413 CGGTTACCGGGAAGAACAGACAACGAGATCAAAAACTTTTGGAAC 457
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 50435083588
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5