BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895592
Length=903
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05170.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1247 0.0
> AT4G05170.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr4:2667990-2669364 REVERSE LENGTH=894
Length=894
Score = 1247 bits (675), Expect = 0.0
Identities = 833/907 (92%), Gaps = 20/907 (2%)
Strand=Plus/Plus
Query 4 ACGGAAGAGTTTGAGATCGCCGGAATCTCCACGGGAGCTTGGTGGAGTTCGCCAACAAAC 63
|||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||
Sbjct 1 ACGGAAGAGTTTGAGATCGCAGGAATCTCCACCGGAGCTTGGTGGAGCTCGCCAACAAAC 60
Query 64 ACCACCACAATATACTCTGGCTACTCGCTGCCACGTTCCACTGAGATTAGCCTTGATGTC 123
||| || || ||| ||||||||||||||||||| |||||||||||||||||| |||||||
Sbjct 61 ACCGCCGCAGTATTCTCTGGCTACTCGCTGCCATGTTCCACTGAGATTAGCCCTGATGTC 120
Query 124 ACAAATTTCGGATGGCAAAACTTCGATAACAAGATTAACGATCCTAATGATGGTTTTATT 183
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||
Sbjct 121 ACAAATTTCGGATGGCAAAACTTCGATAACAAGATTAACGATCATAATGATGGTTGTATG 180
Query 184 AACATGCATAATAGTTTCTTTGAAGG---ATTATTCGATCCTAACGAGCAATTACTACCG 240
|||||||||||||||||||| ||||| |||| ||||||||||||| ||||||||||||
Sbjct 181 AACATGCATAATAGTTTCTTCGAAGGACTATTAATCGATCCTAACGATCAATTACTACCG 240
Query 241 GATTCTTGG-CCAAAAAGTACAGTTCCTAATGCGAAATCCGAGCTCCTTGAAAGCTTCCC 299
||| | ||| || ||||||||| ||||||| || ||||| ||||||||||||| ||||||
Sbjct 241 GATCCATGGTCC-AAAAGTACAATTCCTAACGCTAAATCTGAGCTCCTTGAAAACTTCCC 299
Query 300 ATTCTTAGATAACATGTTCTTGATCGATACAGAAGCTGAATCATTCTTGGATCATGAAAT 359
|||||||||||||||||||||| ||||| ||||||||||||| || ||||||||||||||
Sbjct 300 ATTCTTAGATAACATGTTCTTGGTCGATTCAGAAGCTGAATCTTTGTTGGATCATGAAAT 359
Query 360 CAGAAACCATAA--C-TCTAAGGAGCAAACTACACAAGACTGTAAGAATTTTACTTCAAA 416
|||||||||||| | ||||||||||||| ||||||||||| |||||| ||||||||||
Sbjct 360 CAGAAACCATAAGTCGTCTAAGGAGCAAATTACACAAGACTACAAGAATCTTACTTCAAA 419
Query 417 GGGGAGCGAAAGGACTGAAGAATTAGAAGAGAACAGCGACGAATATTCACCGCGATTACT 476
||| | | | |||||||||||||||||||||||| || |||||||||||||||||
Sbjct 420 ---GAG-G--A-G--TGAAGAATTAGAAGAGAACAGCGATGAGTATTCACCGCGATTACT 470
Query 477 AAAAAGACAGAGACTCGAGACACTATCTCCATTGCCAAGCTTCAAGGTTCGTAAAGAGAA 536
|||||||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 471 AAAAAGACCGAGACTCGAGACACTATCTCCATTGCCAAGCTTCAAAGTTCGTAAAGAAAA 530
Query 537 ACTCGGAGATAGAATCACTGCGCTTCAGCAACTGGTTTCACCATTTGGCAAGACAGATAC 596
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 531 ACTCGGAGATAGAATCACTGCGCTTCAGCAACTGGTTTCTCCATTTGGCAAGACAGATAC 590
Query 597 AGCTTCTGTTCTCAATGAAGCTGTAGAGTACATAAAGTTTCTTCAAGAACAAGTCACTGT 656
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 591 AGCTTCTGTTCTCAACGAAGCTGTAGAGTACATAAAGTTTCTTCAAGAACAAGTCACTGT 650
Query 657 ATTGAGTAATCCAGACCAGAACACCATAGGATCTGTTCAACAACAGCAGTGTTCAGACAA 716
||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 651 ATTGAGTAATCCAGAACAGAACACCATAGGATCTGTTCAACAACAGCAGTGTTCAAACAA 710
Query 717 GAAATCTATGAATACTCaagaagaagaagaagaagaagaagaaTGTAGTCCAAGAAAACA 776
||||||||| |||||||||| || |||| ||||||||| |||||||||||||||| | |
Sbjct 711 GAAATCTATCAATACTCAAG--GA-GAAGTAGAAGAAGACGAATGTAGTCCAAGAAGATA 767
Query 777 TGTAGATCTCGCGAGCCGTGGGCTATGTCTGATGCCGATCTCAGCTTCATATCCGGTGGC 836
||||||||| |||||||||| |||||||| ||||||||||||||||||||||| |||||
Sbjct 768 TGTAGATCTTTCGAGCCGTGGACTATGTCTAATGCCGATCTCAGCTTCATATCCCGTGGC 827
Query 837 TGCAGCCGCGGCTTCGGCTGCAGAGATGAACCTACATCTGATTTCTGGAATCTTCCATTC 896
|||||| |||||||||||||||||||||||| |||||||| ||||||| |||||||||||
Sbjct 828 TGCAGCTGCGGCTTCGGCTGCAGAGATGAACGTACATCTGGTTTCTGGCATCTTCCATTC 887
Query 897 TGTGTAA 903
| |||||
Sbjct 888 TTTGTAA 894
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44105581066
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5