BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895600
Length=429
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05310.1 | Symbols: | Ubiquitin-like superfamily protein | ... 143 1e-33
AT4G05260.1 | Symbols: | Ubiquitin-like superfamily protein | ... 130 1e-29
> AT4G05310.1 | Symbols: | Ubiquitin-like superfamily protein
| chr4:2714765-2716012 FORWARD LENGTH=1248
Length=1248
Score = 143 bits (77), Expect = 1e-33
Identities = 100/111 (90%), Gaps = 2/111 (2%)
Strand=Plus/Plus
Query 196 GAAGAGTACTTTGAGGGA-CAAGAGTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 254
||||||||||||| ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct 301 GAAGAGTACTTTG-CGGAGCAAGATTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 359
Query 255 TAGTTATCAGCCTGAGACAACACAAGGGATCAGTAAGGTTCAAGATTCGCA 305
||||||| |||||||||||| |||| ||||||||| |||||||| ||||
Sbjct 360 CAGTTATCGGCCTGAGACAACCCAAGACATCAGTAAGATTCAAGATGCGCA 410
> AT4G05260.1 | Symbols: | Ubiquitin-like superfamily protein
| chr4:2693680-2694459 FORWARD LENGTH=780
Length=780
Score = 130 bits (70), Expect = 1e-29
Identities = 76/79 (96%), Gaps = 0/79 (0%)
Strand=Plus/Plus
Query 24 AATCGGAGATCTCATTTACGGTGAGGATTTGCCTTTGACAACTGAAGTTGTCTTGAAAAT 83
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct 270 AATCGGAGATCTCATTTACGGTGAGGATTTGCCTTTGACAACTGAAGTTGTTTTGAATAT 329
Query 84 TCGACCTTTTTGCCCTGTT 102
||||||||||||||| |||
Sbjct 330 TCGACCTTTTTGCCCAGTT 348
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 20358438345
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5