BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg895600 Length=429 Score E Sequences producing significant alignments: (Bits) Value AT4G05310.1 | Symbols: | Ubiquitin-like superfamily protein | ... 143 1e-33 AT4G05260.1 | Symbols: | Ubiquitin-like superfamily protein | ... 130 1e-29 > AT4G05310.1 | Symbols: | Ubiquitin-like superfamily protein | chr4:2714765-2716012 FORWARD LENGTH=1248 Length=1248 Score = 143 bits (77), Expect = 1e-33 Identities = 100/111 (90%), Gaps = 2/111 (2%) Strand=Plus/Plus Query 196 GAAGAGTACTTTGAGGGA-CAAGAGTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 254 ||||||||||||| ||| ||||| ||||||||||||||||||||||||||||||||||| Sbjct 301 GAAGAGTACTTTG-CGGAGCAAGATTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA 359 Query 255 TAGTTATCAGCCTGAGACAACACAAGGGATCAGTAAGGTTCAAGATTCGCA 305 ||||||| |||||||||||| |||| ||||||||| |||||||| |||| Sbjct 360 CAGTTATCGGCCTGAGACAACCCAAGACATCAGTAAGATTCAAGATGCGCA 410 > AT4G05260.1 | Symbols: | Ubiquitin-like superfamily protein | chr4:2693680-2694459 FORWARD LENGTH=780 Length=780 Score = 130 bits (70), Expect = 1e-29 Identities = 76/79 (96%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 24 AATCGGAGATCTCATTTACGGTGAGGATTTGCCTTTGACAACTGAAGTTGTCTTGAAAAT 83 ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| || Sbjct 270 AATCGGAGATCTCATTTACGGTGAGGATTTGCCTTTGACAACTGAAGTTGTTTTGAATAT 329 Query 84 TCGACCTTTTTGCCCTGTT 102 ||||||||||||||| ||| Sbjct 330 TCGACCTTTTTGCCCAGTT 348 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 20358438345 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5