BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg895611
Length=1011
Score E
Sequences producing significant alignments: (Bits) Value
AT4G05440.1 | Symbols: EDA35 | temperature sensing protein-rela... 1570 0.0
AT4G05495.1 | Symbols: | D123 -related protein, pseudogene, te... 697 0.0
> AT4G05440.1 | Symbols: EDA35 | temperature sensing protein-related
| chr4:2757214-2758275 FORWARD LENGTH=1062
Length=1062
Score = 1570 bits (850), Expect = 0.0
Identities = 964/1016 (95%), Gaps = 19/1016 (2%)
Strand=Plus/Plus
Query 1 ATGAAGGAAGAAGAAGTTAATCGATGCCAGATTCAGAATTGGTATCCGAAATTCAAATCT 60
||||||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||
Sbjct 61 ATGAAGGAAGACGAAGTAAATCGATGCCAGATTCAGAATTGGTATCCGAGATTCAAATCC 120
Query 61 TTAACCATCAAAACCAAATTTCACAAACTTCCAGAATCATTCATCAACTATCTCATCGAC 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTAACCATCAAAACCAAATTTCACAAACTTCCAGAATCATTCATCAACTATCTCATCGAC 180
Query 121 GATTCTGGTCCGTTTCTTCTTCCC-GATTCCGTAACAAACGAAGACGCAATGCCTAACAG 179
||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||
Sbjct 181 GATTCTGGTCCGTTTCTTC-TCCCTCATTCCGTAACAAACGAAGACGCAATGCCTAACAG 239
Query 180 AGTCCACAATTTCGAAGAAGAAGATGATTTCCAAGTCCCCGAAGAAAG-TTCAGATAACG 238
|||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |
Sbjct 240 AGTCCACAATTTCGAAGAAGAAGATGATTTCCAAGTCCCCGAAG-AAGCTTCAGAT---G 295
Query 239 AAACAGAGCCACCATTGAATCGCCCTTCATTTCCAGAACTCGAAATCGAGATCAGAGAAT 298
|| || |||||||||||| ||||| |||||||||||||||||||||||||||||||
Sbjct 296 --AC-GA---ACCATTGAATCGTCCTTCTTTTCCAGAACTCGAAATCGAGATCAGAGAAT 349
Query 299 CAATCGAAACCCTAGGCGGCACAATTATACCGAAGCTGAATTGGAGTGCACCAAAAGATG 358
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||| |
Sbjct 350 CAATCGAAACCCTAGGCGGCACAATTATCCCGAAGCTGAATTGGAGTTCACCAAAAGACG 409
Query 359 CAGCTTGGATTAGTCCATCACAGAATCTTAGCTGCACTTGTTTCAATGAGATTGCTCTCT 418
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 410 CAGCTTGGATTAGTCCATCACAGAATCTAAGCTGCACTTGTTTCAATGAGATTGCTCTCT 469
Query 419 TGTTTCGTTCTTCAGATTCGTTATTCCATGATCTCTGCAATGCTTATGATTCATGTATTG 478
|||||||||| || ||||||||| ||||||||||| |||||||||||||||||||| ||
Sbjct 470 TGTTTCGTTCCTCTGATTCGTTAACCCATGATCTCTTCAATGCTTATGATTCATGTAGTG 529
Query 479 ATAAAGTCTCTTCAAGGCCAGAAAGTTTCTACCTTGCTTTGAGAAAATGGTACCCTTCTT 538
| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
Sbjct 530 ACAAAGTCTCTTCAAGGCCAGAAAGTTTCTACCTTGCGTTGAGAAAATGGTACCCTTCGT 589
Query 539 TGAAGCCTGAGATGGAATTTAGATGCTTTGTGAAATCTAACGACCTTGTTGGGATTTGTC 598
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 590 TGAAGCCTGAGATGGAATTTAGATGCTTTGTGAAATCTAACGAGCTTGTTGGGATTTGTC 649
Query 599 AGCGTGAGGTAACAACATTTTACCCTGTTCTTCTCAATGAGAAGGATTTGATCAAAGGG- 657
||||||||||||| |||||||||||||||||||||||||||||||||||| || |||||
Sbjct 650 AGCGTGAGGTAACTACATTTTACCCTGTTCTTCTCAATGAGAAGGATTTGCTC-AAGGGT 708
Query 658 TTGATAGAAGAGTTCTTTGATGATCAGATTAGGTTTGAATTTGAATCACAGAATTACACT 717
|||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||
Sbjct 709 TTGATAGAAGAGTTCTTTGATGATAAGATTAGGTTTGAATTTGAATCAGAGAATTACACT 768
Query 718 TTTGATGTTTATGTGACGAAAGAGAGAAAG-GTTAAGCTAATAGATTTCAATACTTGGTG 776
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||
Sbjct 769 TTTGATGTTTATGTGACGAAAGAGAG-AAGAGTTAAGCTAATAGATTTCAATACTTGGTG 827
Query 777 TGGTTCGACTTTGCCATTGATGTATACATGGGAAGAACTTGAAAAGATTCATGGAGAATG 836
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 828 TGGTTCTACTTTGCCATTGATGTATACATGGGAAGAACTTGAGAAGATTCATGGAGAATG 887
Query 837 TGATGAATTGGAATTGAGGATTGTTGAGAGTCGTCTCAGTGTGCTTCCTGGTTTGAAAAC 896
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 888 TGATGAATTGGAATTGAGGATTGTTGAGAGCCGTCTCAGTGTGCTTCCTGGTTTGAAAAC 947
Query 897 AGCTGTTCCTTATGATTATCTTGACGTGAGTCCTGGTAGTGGTTGGGATCAGGTTCTTAA 956
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 948 AGCTGTTCCTTATGATTATCTTGACGTGAGTGCTGGTAGTGGTTGGGCTCAGGTTCTTAA 1007
Query 957 GATAGCGGAAGAGGAGTTTCAGAAAGA-GAATCAGAGTTCGGATGAATTTGCTTGA 1011
||||| ||||||||||||||||||||| || ||||||||| |||||| ||||||||
Sbjct 1008 GATAGTGGAAGAGGAGTTTCAGAAAGACGA-TCAGAGTTCTGATGAAGTTGCTTGA 1062
> AT4G05495.1 | Symbols: | D123 -related protein, pseudogene,
temporary automated functional assignment; blastp match of 40%
identity and 1.5e-14 P-value to GP|28829467|gb|AAO52005.1||AC116988
similar to Homo sapiens (Human). HT-1080 protein
(D123 gene product) (Hypothetical protein) {Dictyostelium discoideum}
| chr4:2776689-2777150 REVERSE LENGTH=462
Length=462
Score = 697 bits (377), Expect = 0.0
Identities = 434/462 (94%), Gaps = 1/462 (0%)
Strand=Plus/Plus
Query 550 ATGGAATTTAGATGCTTTGTGAAATCTAACGACCTTGTTGGGATTTGTCAGCGTGAGGTA 609
|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||
Sbjct 1 ATGGAATTTAGATGCTTTGTGAAATCTAACGAGCTTGTTGGGATTTGCCAGCGTGAGGTA 60
Query 610 ACAACATTTTACCCTGTTCTTCTCAATGAGAAGGATTTGATCAAAGGGTTGATAGAAGAG 669
|| |||||||||||||||||||||||||||||||| ||| |||| |||||| ||||||||
Sbjct 61 ACTACATTTTACCCTGTTCTTCTCAATGAGAAGGAGTTGCTCAAGGGGTTGGTAGAAGAG 120
Query 670 TTCTTTGATGATCAGATTAGGTTTGAATTTGAATCACAGAATTACACTTTTGATGTTTAT 729
|||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||
Sbjct 121 TTCTTTGATGATAAGATTAGGTTTGAATTTGAATCAGAGAGTTACACTTTTGATGTTTAA 180
Query 730 GTGACGAAAGAGAGAAAGGTTAAGCTAATAGATTTCAATACTTGGTGTGGTTCGACTTTG 789
|||||||| ||||||| ||||||||||||||| ||||||||||||||||||| ||||||
Sbjct 181 GTGACGAAGGAGAGAAGGGTTAAGCTAATAGAAATCAATACTTGGTGTGGTTCTACTTTG 240
Query 790 CCATTGATGTATACATGGGAAGAACTTGAAAAGATTCATGGAGAATGTGATGAATTGGAA 849
|||||||||||||||||| |||||||||| |||||||||||||||||||| |||||||||
Sbjct 241 CCATTGATGTATACATGGAAAGAACTTGAGAAGATTCATGGAGAATGTGAGGAATTGGAA 300
Query 850 TTGAGGATTGTTGAGAGTCGTCTCAGTGTGCTTCCTGGTTTGAAAACAGCTGTTCCTTAT 909
|||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 301 TTGAGGATTGGTGAGAGCCGTCTCAGTGTGCTTCCTGGTTTGAAAACAGCTGTTCCTTAT 360
Query 910 GATTATCTTGACGTGA-GTCCTGGTAGTGGTTGGGATCAGGTTCTTAAGATAGCGGAAGA 968
|||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||
Sbjct 361 GATTATCTTGACGTGATGTCCTGGTAGTGGTTGGCTTCAGGTTCTTAAGATAGCGGAAGA 420
Query 969 GGAGTTTCAGAAAGAGAATCAGAGTTCGGATGAATTTGCTTG 1010
||||||||||||||| |||||||||| |||||| |||||||
Sbjct 421 AGAGTTTCAGAAAGAGGATCAGAGTTCTGATGAAGTTGCTTG 462
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49530868942
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5