BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895617

Length=237
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G12830.1 | Symbols:  | SAUR-like auxin-responsive protein fa...   296    6e-80


> AT3G12830.1 | Symbols:  | SAUR-like auxin-responsive protein 
family  | chr3:4078651-4079608 REVERSE LENGTH=958
Length=958

 Score =  296 bits (160),  Expect = 6e-80
 Identities = 178/187 (95%), Gaps = 0/187 (0%)
 Strand=Plus/Plus

Query  49   GTTCCTGAAGGACACGTACTGGTCTATGTAGGTGACGAGATGGAGAGGTTCGTCGTTAGC  108
            ||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||
Sbjct  241  GTTCCCGAAGGACACGTACCGGTCTACGTAGGTGACGAGATGGAGAGGTTCGTCGTTAGC  300

Query  109  GCCGAGCTACTTAACCATCCGGTTTTCATCGGTTTACTAAACCGATCTGCTCAAGAGTAT  168
            || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  301  GCGGAGCTACTTAACCATCCGGTTTTCATCGGTTTACTAAACCGATCTGCTCAAGAGTAT  360

Query  169  GGATATGAGCAAAAAGAAGTTCTACAAATCCCTTGCCATGTACTTGTCTTCGAAAGAATC  228
            || || |||||||||| |||||||||||||||||||||||| |||||||||||| |||||
Sbjct  361  GGTTACGAGCAAAAAGGAGTTCTACAAATCCCTTGCCATGTCCTTGTCTTCGAACGAATC  420

Query  229  ATGGAAT  235
            |||||||
Sbjct  421  ATGGAAT  427



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 10707030537


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5