BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895620

Length=327
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT3G18130.1 | Symbols: RACK1C_AT | receptor for activated C kin...   100    7e-21


> AT3G18130.1 | Symbols: RACK1C_AT | receptor for activated C kinase 
1C | chr3:6210904-6212433 REVERSE LENGTH=1248
Length=1248

 Score =  100 bits (54),  Expect = 7e-21
 Identities = 64/69 (93%), Gaps = 0/69 (0%)
 Strand=Plus/Plus

Query  205  TTGCAGGTTGATCTTAAGGCTGAGGCAGAGAAGACTGATGGTGGTGTTGGAACTGGTAAC  264
            ||| |||||||||| ||| ||||||||||||||| ||| |||||||||||||||||||||
Sbjct  873  TTGAAGGTTGATCTCAAGTCTGAGGCAGAGAAGAATGAAGGTGGTGTTGGAACTGGTAAC  932

Query  265  CAGAAGAAG  273
            |||||||||
Sbjct  933  CAGAAGAAG  941



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 15231127947


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5