BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895628

Length=381
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT4G05310.1 | Symbols:  | Ubiquitin-like superfamily protein | ...   143    1e-33


> AT4G05310.1 | Symbols:  | Ubiquitin-like superfamily protein 
| chr4:2714765-2716012 FORWARD LENGTH=1248
Length=1248

 Score =  143 bits (77),  Expect = 1e-33
 Identities = 100/111 (90%), Gaps = 2/111 (2%)
 Strand=Plus/Plus

Query  148  GAAGAGTACTTTGAGGGA-CAAGAGTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA  206
            |||||||||||||  ||| ||||| |||||||||||||||||||||||||||||||||||
Sbjct  301  GAAGAGTACTTTG-CGGAGCAAGATTGGCCTTTGACAGAGGAAGAGATCAGAAAGATTTA  359

Query  207  TAGTTATCAGCCTGAGACAACACAAGGGATCAGTAAGGTTCAAGATTCGCA  257
             ||||||| |||||||||||| ||||  ||||||||| |||||||| ||||
Sbjct  360  CAGTTATCGGCCTGAGACAACCCAAGACATCAGTAAGATTCAAGATGCGCA  410



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 17945586393


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5