BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg895651

Length=390
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52640.1 | Symbols: HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90...   307    4e-83
  AT2G37080.1 | Symbols: RIP3 | ROP interactive partner 3 | chr2:...   130    1e-29


> AT5G52640.1 | Symbols: HSP81-1, ATHS83, HSP81.1, HSP83, ATHSP90.1, 
AtHsp90-1, HSP90.1 | heat shock protein 90.1 | chr5:21352399-21355361 
FORWARD LENGTH=2475
Length=2475

 Score =  307 bits (166),  Expect = 4e-83
 Identities = 182/190 (96%), Gaps = 0/190 (0%)
 Strand=Plus/Plus

Query  176  AGCTTGAATACTTGGAGGAGAGGAGACTCAAAGACTTGGTAAAGAAGCACTCTGAGTTCA  235
            |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  703  AGCTTGAATACTTGGAGGAGAGGAGACTCAAAGACTTGGTGAAGAAGCACTCTGAGTTCA  762

Query  236  TCAGTTACCCGATTTATCTGTGGACCGAGAAAACCACTGAGAAGGAGATCAGtgatgatg  295
            |||||||||| || || || ||||||||||||||||| ||||||||||||||||| ||||
Sbjct  763  TCAGTTACCCTATCTACCTTTGGACCGAGAAAACCACCGAGAAGGAGATCAGTGACGATG  822

Query  296  aggatgaagatgaaccaaagaaagaaaatgaaggtgaggttgaagaagttgatgaggaga  355
            |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct  823  AGGATGAAGATGAACCAAAGAAAGAAAACGAAGGTGAGGTTGAAGAAGTTGATGAGGAGA  882

Query  356  aggagaaagA  365
            ||||||||||
Sbjct  883  AGGAGAAAGA  892


> AT2G37080.1 | Symbols: RIP3 | ROP interactive partner 3 | chr2:15581386-15585186 
REVERSE LENGTH=2226
Length=2226

 Score =  130 bits (70),  Expect = 1e-29
 Identities = 78/82 (95%), Gaps = 0/82 (0%)
 Strand=Plus/Plus

Query  31    AAACCAGCTGAAGCCGCCGCTACTATGCTCTCTAGTGGTAACAACAACAATACCAGTAAC  90
             ||| ||||||||||||| ||||||||||||||| |||||||||||||||||| |||||||
Sbjct  1820  AAAGCAGCTGAAGCCGCAGCTACTATGCTCTCTGGTGGTAACAACAACAATAACAGTAAC  1879

Query  91    GGGAAGTACGTGGAGAGAACAG  112
             ||||||||||||||||||||||
Sbjct  1880  GGGAAGTACGTGGAGAGAACAG  1901



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 18397996134


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5